Introduction

This software generates gene summaries for Model Organisms part of the Alliance of Genome Resources project.

Installation

To install the software, clone the repository and run the following command from the root directory of the project:

$ pip3 install .

Generating summaries for WormBase

To generate gene summaries for WormBase, run the exec_all_pipelines.sh shell script in the wormbase folder.

Configuring the main script

the main script can be configured through a configuration file in .yaml format. The default file is genedesc.yaml, but a different file can be provided by using the argument -c.

To configure the WormBase pipeline, modify the file config_wb.yml in the wormbase folder.