cell_detection

This repo is for developing a method of segmenting and classifying cells from microscopy images. The method is work in progress.

requirements

python 3.10, poetry > 3.1

getting started

Install dependencies by

poetry install

orderless_levelsets.py implements an orderless image loss function for segmentation segmentation.py runs the orderless segmentation method image_loader.py contains the class for reading and preprocessing the images