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Lecture notes for the Biostatistics Bootcamp taught during the Summer of 2023 for the KUH students within the Yale Summer Undergraduate Medical Research program.

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Session 1

  • Basics of programming with R and its Data Structures
  • Loading the dataset / Intro to Medical EHR data
  • Univariate Exploratory Analysis

Session 2

  • Univariate Exploratory Analysis Continued
  • Bivariate Exploratory Analysis
  • Intro to Probability Concepts and Simulation

Session 3

  • The Null-Hypothesis Testing Framework
  • Continuous-Continuous Tests
  • Continuous-Discrete Tests
  • Discrete-Discrete Tests
  • Power and Sample Size Calculation
  • Issues with Multiple Testing

Session 4

  • Intro to Estimation Concepts
  • The Basic Linear Model
  • Transforming Categorical, Ordinal, and Continuous Predictors to Interpret their Coefficients
  • Multivariate Adjustment and Model Diagnostics
  • Flexible Modeling (Basis expansions, etc...)
  • Relaxing Assumptions

Session 5

  • Frisch-Waugh-Lowell Theorem
  • Quantile Regression
  • Logistic Regression
  • Intro to Survival Analysis Concepts and the 3 Basic Functions
  • Designing Hazard Regression Models
  • Left Censoring and Competing Events
  • Kaplan-Meier Estimator and Log-Rank Test
  • Cox PH Model with Adjustment and Model Diagnostics

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Lecture notes for the Biostatistics Bootcamp taught during the Summer of 2023 for the KUH students within the Yale Summer Undergraduate Medical Research program.

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