add few experiments

feature_importance/00_ablation_classification_script.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_classification_retrain.py --nreps 1 --config mdi_local.real_data_classification_credit_g_retrain --split_seed ${1} --rf_seed ${2} --ignore_cache --create_rmd --folder_name credit_g_retrain --fit_model True --absolute_masking True"
+
+# Execute the command
+python $command

feature_importance/00_ablation_classification_script2.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_classification_retrain.py --nreps 1 --config mdi_local.real_data_classification_csi_pecarn_retrain --split_seed ${1} --rf_seed ${2} --ignore_cache --create_rmd --folder_name csi_pecarn_retrain --fit_model True --absolute_masking True"
+
+# Execute the command
+python $command

feature_importance/00_ablation_classification_script3.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_classification_retrain.py --nreps 1 --config mdi_local.real_data_classification_juvenile_retrain --split_seed ${1} --rf_seed ${2} --ignore_cache --create_rmd --folder_name juvenile_retrain --fit_model True --absolute_masking True"
+
+# Execute the command
+python $command

feature_importance/00_ablation_classification_script4.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_classification_retrain.py --nreps 1 --config mdi_local.real_data_classification_Ionosphere_retrain --split_seed ${1} --rf_seed ${2} --ignore_cache --create_rmd --folder_name Ionosphere_retrain --fit_model True --absolute_masking True"
+
+# Execute the command
+python $command

feature_importance/00_ablation_regression_script.sh

@@ -4,7 +4,7 @@
 #SBATCH --partition=yugroup
 source activate mdi
 # Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
-command="00_run_ablation_regression_retrain.py --nreps 1 --config mdi_local.real_data_regression_retrain --split_seed 0 --rf_seed ${1} --ignore_cache --create_rmd --folder_name linear_retrain --fit_model True --absolute_masking True"
+command="00_run_ablation_regression_retrain.py --nreps 1 --config mdi_local.real_data_regression_parkinsons_retrain --split_seed ${1} --rf_seed ${2} --ignore_cache --create_rmd --folder_name parkinsons_retrain --fit_model True --absolute_masking True"
 
 # Execute the command
 python $command

feature_importance/00_ablation_regression_script2.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_regression_retrain.py --nreps 1 --config mdi_local.real_data_regression_performance_retrain --split_seed ${1} --rf_seed ${2} --ignore_cache --create_rmd --folder_name performance_retrain --fit_model True --absolute_masking True"
+
+# Execute the command
+python $command

feature_importance/00_ablation_regression_script3.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_regression_retrain.py --nreps 1 --config mdi_local.real_data_regression_temperature_retrain --split_seed ${1} --rf_seed ${2} --ignore_cache --create_rmd --folder_name temperature_retrain --fit_model True --absolute_masking True"
+
+# Execute the command
+python $command

feature_importance/00_ablation_regression_script4.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_regression_retrain.py --nreps 1 --config mdi_local.real_data_regression_CCLE_PD_0325901_retrain --split_seed ${1} --rf_seed ${2} --ignore_cache --create_rmd --folder_name CCLE_PD_0325901_retrain --fit_model True --absolute_masking True"
+
+# Execute the command
+python $command

feature_importance/00_ablation_regression_stability_script.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_regression_stability.py --nreps 1 --config mdi_local.real_data_regression_parkinsons_retrain --split_seed ${1} --ignore_cache --create_rmd --folder_name parkinsons_stability"
+
+# Execute the command
+python $command

feature_importance/00_ablation_regression_stability_script2.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_regression_stability.py --nreps 1 --config mdi_local.real_data_regression_performance_retrain --split_seed ${1} --ignore_cache --create_rmd --folder_name performance_stability"
+
+# Execute the command
+python $command

feature_importance/00_ablation_regression_stability_script3.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_regression_stability.py --nreps 1 --config mdi_local.real_data_regression_temperature_retrain --split_seed ${1} --ignore_cache --create_rmd --folder_name temperature_stability"
+
+# Execute the command
+python $command

feature_importance/00_ablation_regression_stability_script4.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+#SBATCH [email protected]
+#SBATCH --mail-type=ALL
+#SBATCH --partition=yugroup
+source activate mdi
+# Need to specify --result_name --ablate_features(default all features) --fitted(default not fitted)
+command="00_run_ablation_regression_stability.py --nreps 1 --config mdi_local.real_data_regression_CCLE_PD_0325901_retrain --split_seed ${1} --ignore_cache --create_rmd --folder_name CCLE_PD_0325901_stability"
+
+# Execute the command
+python $command

feature_importance/00_ablation_script_class.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+slurm_script="00_ablation_classification_script4.sh"
+
+for split_seed in {1..3}; do
+    for rf_seed in {1..5}; do
+        sbatch $slurm_script $split_seed $rf_seed  # Submit SLURM job with both split_seed and rf_seed as arguments
+        sleep 2
+    done
+done

feature_importance/00_ablation_script_regr.sh

@@ -1,9 +1,10 @@
 #!/bin/bash
 
-slurm_script="00_ablation_regression_script.sh"
+slurm_script="00_ablation_regression_script4.sh"
 
-for rep in {1..2}
-do
-    sbatch $slurm_script $rep  # Submit SLURM job using the specified script
-    sleep 2
+for split_seed in {1..3}; do
+    for rf_seed in {1..5}; do
+        sbatch $slurm_script $split_seed $rf_seed  # Submit SLURM job with both split_seed and rf_seed as arguments
+        sleep 2
+    done
 done

feature_importance/00_ablation_script_regr_stability.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+
+slurm_script="00_ablation_regression_stability_script4.sh"
+
+for split_seed in {1..3}; do
+    sbatch $slurm_script $split_seed # Submit SLURM job with both split_seed and rf_seed as arguments
+    sleep 2
+done