STAT 215A Submission for Jimmy Butler, Andrej Leban, Ian Shen, and Xin Zhou#7

Open

andleb wants to merge 149 commits intoYu-Group:masterfrom andleb:master

+67,327-5

Commits on Nov 16, 2021

Init commit after fork: copied templates, ignored data/tbi_pecarn/
andleb
committed
added data files and my notebook

James Butler
authored and
James Butler
committed

Commits on Nov 17, 2021

updated notebook

James Butler
authored and
James Butler
committed

Commits on Nov 18, 2021

Commits on Nov 22, 2021

Commits on Nov 24, 2021

did some cleaning

James Butler
authored and
James Butler
committed
Removed temp file
andleb
committed

Commits on Nov 26, 2021

baseline
Xin Zhou
committed

Commits on Nov 27, 2021

baseline wd
Xin Zhou
committed
part of dataset
Xin Zhou
committed
Added documentation to dataset.py, small bugfixes
andleb
committed
Jimmy's EDA nb: compatibility, comments
andleb
committed
documented cleaning process more clearly

James Butler
authored and
James Butler
committed
dataset.py
Xin Zhou
committed
commenting/documenting cleaning steps

James Butler
authored and
James Butler
committed
Merge branch 'master' of https://github.com/andleb/rule-vetting

James Butler
authored and
James Butler
committed

Commits on Nov 28, 2021

dataset.py modified
Xin Zhou
committed
edited some data cleaning notebooks/changed paths

James Butler
authored and
James Butler
committed
Merge branch 'master' of https://github.com/andleb/rule-vetting

James Butler
authored and
James Butler
committed
Put doc back into dataset
andleb
committed
Union vars, dataset judgement calls wip
andleb
committed

Commits on Nov 29, 2021

deleting notebook

James Butler
authored and
James Butler
committed
Merge branch 'master' of https://github.com/andleb/rule-vetting

James Butler
authored and
James Butler
committed
HEMA JCs, WIP
andleb
committed
Hema logic
andleb
committed
preprocess_data: re-worked, judgement calls implemented
andleb
committed

Commits on Nov 30, 2021

Commits on Dec 1, 2021

documenting preprocessing and small changes to dataset.py

James Butler
authored and
James Butler
committed
started postprocessing EDA

James Butler
authored and
James Butler
committed
baseline original
Xin Zhou
committed

Commits on Dec 2, 2021

described the dataset and umbrella flattening procedure

James Butler
authored and
James Butler
committed
added feature extraction judgement call for AMs variables

James Butler
authored and
James Butler
committed
updated readme.md
jbbutler
authored
updated readme.md
jbbutler
authored
updated again
jbbutler
authored
did some postprocessing EDA

James Butler
authored and
James Butler
committed
Merge branch 'master' of https://github.com/andleb/rule-vetting

James Butler
authored and
James Butler
committed
Add files via upload
ias5
authored

Commits on Dec 3, 2021

models_Xin.ipynb
Xin Zhou
committed
interpret Models_Xin
Xin Zhou
committed
Merge branch 'judg_calls'
andleb
committed
added the writeup markdown file

James Butler
authored and
James Butler
committed

Commits on Dec 4, 2021

worked on some models and EDA

James Butler
authored and
James Butler
committed

Commits on Dec 5, 2021

did some EDA and added GCS recoding in dataset.py

James Butler
authored and
James Butler
committed
stash merge
andleb
committed
updates to dataset.py
andleb
committed
Unioning of umbrellas implemented
andleb
committed
Dataset - work on perturbations
andleb
committed

Commits on Dec 6, 2021

Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
Update data_dictionary.md
jbbutler
authored
wrote intro

James Butler
authored and
James Butler
committed
Merge branch 'master' of https://github.com/andleb/rule-vetting

James Butler
authored and
James Butler
committed
Age splitting
andleb
committed
did some more writing

James Butler
authored and
James Butler
committed
Merge branch 'master' of https://github.com/andleb/rule-vetting

James Butler
authored and
James Butler
committed
OSI umbrella, touched up data_dictionary
andleb
committed
Merge remote-tracking branch 'origin/master'
andleb
committed
In-place documentation for the judgment calls
andleb
committed
dataset - removed all *GCS* from the age invariant split
andleb
committed
ageinvariant GCS removed
Xin Zhou
committed
model exploration
andleb
committed
rulefit_Xin
Xin Zhou
committed
Revert "ageinvariant GCS removed"
andleb
committed
Merge branch 'master' into test
andleb
committed

Commits on Dec 7, 2021

grl_xin
Xin Zhou
committed
Changed intro figures to be specific to children; added source
ias5
authored
Added CDC citation about TBI incidence
ias5
authored
minor tweak in dataset
andleb
committed
work on rulefit
andleb
committed
Merge branch 'master' of github.com:andleb/rule-vetting
andleb
committed
RF RMD with hyperparameters and ROC plots
ias5
authored
did some writing

James Butler
authored and
James Butler
committed
fixing writing merge conflict

James Butler
authored and
James Butler
committed
baseline model modified
Xin Zhou
committed
wrote up EDA

James Butler
authored and
James Butler
committed
Merge branch 'master' of https://github.com/andleb/rule-vetting

James Butler
authored and
James Butler
committed

Commits on Dec 8, 2021

Minor updates, largely to EDA
ias5
authored
fixed some EDA plots

James Butler
authored and
James Butler
committed
baseline writeup
Xin Zhou
committed

Commits on Dec 9, 2021

edited the writeup a bit

James Butler
authored and
James Butler
committed
baseline.py
Xin Zhou
committed
writeup classifier
Xin Zhou
committed
proofreading

James Butler
authored and
James Butler
committed
proofreading

James Butler
authored and
James Butler
committed
references
andleb
committed
Some rulefit writeup, basic model results
andleb
committed
added some notes for writeup

James Butler
authored and
James Butler
committed
Unignored some pickles, added articles and the pdf
andleb
committed
Merge remote-tracking branch 'origin/master'
andleb
committed
Added the stats - ROC curve - for the basic and the maximal model
andleb
committed

Commits on Dec 10, 2021

model_bset.py
Xin Zhou
committed
Intro to rulefit writeup
andleb
committed
Replaced "judgement" with "judgment"
andleb
committed
Added RF writeup in stability analysis
ias5
authored
Make age invariant
ias5
authored
Delete tbi_rf.pdf
ias5
authored
Made age invariant
ias5
authored
Add files via upload
ias5
authored
Added importance image
ias5
authored
Randomness writeup
andleb
committed
Merge remote-tracking branch 'origin/master'
andleb
committed
bugfix
andleb
committed
writeup+fig
Xin Zhou
committed
did perturbations and posthoc, worked on dataset.py

James Butler
authored and
James Butler
committed
writeup

James Butler
authored and
James Butler
committed
fixed merge conflicts in writeup

James Butler
authored and
James Butler
committed
Proofreading
ias5
authored

Commits on Dec 11, 2021

writeup
Xin Zhou
committed
greedy rule list
Xin Zhou
committed
comment for py models
Xin Zhou
committed
comment ipynb Xin
Xin Zhou
committed
proofreading Xin
Xin Zhou
committed
Virtual env check not required
andleb
committed
Merge remote-tracking branch 'origin/master'
andleb
committed
Complete documentation for dataset.py
andleb
committed
Some proofreading
andleb
committed
dataset autoformat mess fix
andleb
committed
test compatibility, temporarily modified test_models for checking
andleb
committed
figures size
Xin Zhou
committed
editing the writeup

James Butler
authored and
James Butler
committed
forgot to push changes from yesterday

James Butler
authored and
James Butler
committed
did some more proofreading/reorganizing

James Butler
authored and
James Butler
committed
some more editing

James Butler
authored and
James Butler
committed

Commits on Dec 12, 2021

Update readme.md
jbbutler
authored
reorganizing notebooks

James Butler
authored and
James Butler
committed
Merge branch 'master' of https://github.com/andleb/rule-vetting

James Butler
authored and
James Butler
committed
Create readme.md
jbbutler
authored
Create contributions.md
jbbutler
authored
greedy rule list
Xin Zhou
committed
table 2
Xin Zhou
committed
Fixed broken refs
andleb
committed
Removed the modifications to the tests
andleb
committed
Cleanup
andleb
committed

Commits on Apr 1, 2022

Don't push feedback
andleb
committed