v1.5.5

What's Changed

• Use Mamba for installation by @apcamargo in #178
• Update to work with ColabFold >= 1.5.5 by @milot-mirdita in #205
• Use JAX/jaxlib 0.4.xx compatible with CUDA 11.8 or later

New Contributors

• @apcamargo made their first contribution in #178
• @memgonzales made their first contribution in #189
• @GUOSHU-COOL made their first contribution in #193
• @milot-mirdita made their first contribution in #205

Full Changelog: v1.5.2...v1.5.5

v1.5.2

• Use Python 3.10 or 3.11 to be compatible with Google Colab.
• Use CUDA 11.6 and cudnn 8.2.1.32

What's Changed

• jax==0.3.25 is not compatible with the latest chex by @hseara in #151

New Contributors

• @hseara made their first contribution in #151

Full Changelog: v1.5.1...v1.5.2

v1.5.1

• The base directory has been changed to localcolabfold from colabfold_batch to distinguish it from the execution command.
• Use Python 3.9 to be compatible with Google Colab.

v1.5.0

• Compatible with AlphaFold 2.3.1 and ColabFold 1.5.0
• Use Python3.8 by default.
• Use jax == 0.3.25 and jaxlib==0.3.25 with cuda.
• bin directory has been removed. Please add an environment variable PATH colabfold-conda/bin to use colabfold_batch command instead (e.g. export PATH=/path/to/colabfold-conda/bin:$PATH).
• AlphaFold2 weight parameters for monomers and multimer-v2.3 will be downloaded at the installation.

v1.4.0

• Update to be compatible with jax == 0.3.13 and jaxlib==0.3.10(+cuda).

v1.3.0

• Add dependency of kalign 3.3.2 for M1 Mac (6cd1a38)
• Use https instead of git for M1 Mac (0ad333f, #78)
• Use 'Agg' for non-GUI backend (f7f06d9)

v.1.2.1

• Fix missing pip install scipy for Apple M1 mac (issue #55)
• Apply the GPU relaxation patch again for update_linux.sh when updating alphafold-colabfold

v1.2.0

• Compatible with the latest pip installable colabfold that runs locally.
• Add update scripts.

v1.2.0-alpha

• Compatible with the latest pip installable colabfold that runs locally.

v.1.0.0

LocalColabFold compatible with AlphaFold2_advanced on Nov.5, 2021.