Adding docker check (trying to)

.Rbuildignore

@@ -15,4 +15,5 @@ Makefile
 defm\.code-workspace
 README\.html
 paper/
-\.vscode
+\.vscode
+^docker$

Makefile

@@ -33,13 +33,13 @@ inst/NEWS: NEWS.md
 
 # Thanls to Dirk Eddelbuettel for the Dockerfile
 # https://dirk.eddelbuettel.com/blog/2015/01/18/
-docker-check: clean build
-	docker run --rm -ti -v $(PWD):/mnt -w/mnt \
-		--cap-add=SYS_PTRACE \
-		rocker/r-devel-san \
-	 	make littler-install-deps
-
-littler-install-deps:
-	apt update && apt install --no-install-suggests -y libssl-dev && \
-		RDscript --vanilla -e 'install.packages(c("Rcpp", "texreg"), repos = "https://cloud.r-project.org")' && \
-		RD CMD check --as-cran defm_0.1-1.tar.gz
+docker-check:
+	docker run --rm -ti -v $(PWD):/mnt -w/mnt gvegayon/defm:latest make docker-check-all
+
+
+# -fno-sanitize=float-divide-by-zero,vptr \
+		\ # -fno-sanitize-recover"
+docker-check-all: 
+	RD CMD build . && \
+		DEFM_CONFIG="-DBARRY_DEBUG -std=c++11 -fsanitize=address -L/usr/local/lib" \
+		RD CMD check defm_*.tar.gz

docker/Dockerfile

@@ -0,0 +1,11 @@
+FROM rocker/r-devel-san
+
+RUN apt update && apt install --no-install-suggests -y libssl-dev
+
+RUN RDscript --vanilla -e \
+  'install.packages(c("Rcpp", "texreg"), repos = "https://cloud.r-project.org")'
+
+CMD ["bash"]
+
+
+

docker/Dockerfile-clang

@@ -0,0 +1,11 @@
+FROM rocker/r-devel-ubsan-clang
+
+RUN apt update && apt install --no-install-suggests -y libssl-dev
+
+RUN RDscript --vanilla -e \
+  'install.packages(c("Rcpp", "texreg"), repos = "https://cloud.r-project.org")'
+
+CMD ["bash"]
+
+
+

docker/Makefile

@@ -0,0 +1,12 @@
+build: Dockerfile
+	docker build -t gvegayon/defm:latest .
+
+build-clang: Dockerfile-clang
+	docker build -f Dockerfile-clang -t gvegayon/defm:clang .
+
+run:
+	docker run --rm -ti -v $(PWD)/..:/mnt -w/mnt gvegayon/defm:latest bash
+
+
+
+

src/Makevars.in

@@ -1,3 +1,3 @@
 PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) @OPENMP_FLAG@
-PKG_CXXFLAGS=@OPENMP_FLAG@ -I../inst/include/ $(EPI_CONFIG) \
+PKG_CXXFLAGS=@OPENMP_FLAG@ -I../inst/include/ $(DEFM_CONFIG) \
     -Dprintf_barry=Rprintf

src/Makevars.win

@@ -2,7 +2,7 @@ PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
 
 # This is necesary since ARMADILLO now supports OpenMP
 PKG_CXXFLAGS=$(SHLIB_OPENMP_CXXFLAGS) -I../inst/include/ \
-    -Dprintf_barry=Rprintf
+    $(DEFM_CONFIG) -Dprintf_barry=Rprintf
 
 # For testing
 #PKG_CXXFLAGS=-Wall