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@UMEssen

University Medicine Essen

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  1. SALT SALT Public

    Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.

    Python 73 4

  2. FHIR-PYrate FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…

    Python 56 10

  3. saros-dataset saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    Python 28 4

  4. Body-and-Organ-Analysis Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …

    Python 15 4

  5. DICOM-RST DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    Rust 13

  6. dicom-deidentifier-ts dicom-deidentifier-ts Public

    TypeScript 10

Repositories

Showing 10 of 14 repositories
  • FHIR-Converter Public

    Thin wrapper around Microsoft FHIR Converter to allow for a standalone FHIR server that provides data conversion operations.

    UMEssen/FHIR-Converter’s past year of commit activity
    C# 0 MIT 1 0 0 Updated Jul 9, 2024
  • DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    UMEssen/DICOM-RST’s past year of commit activity
    Rust 13 MIT 0 6 0 Updated Jul 8, 2024
  • SALT Public

    Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.

    UMEssen/SALT’s past year of commit activity
    Python 73 MIT 4 1 1 Updated Jun 18, 2024
  • Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.

    UMEssen/Body-and-Organ-Analysis’s past year of commit activity
    Python 15 Apache-2.0 4 3 2 Updated Jun 17, 2024
  • DeidentiFHIR Public
    UMEssen/DeidentiFHIR’s past year of commit activity
    Scala 8 MIT 2 9 0 Updated May 29, 2024
  • saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    UMEssen/saros-dataset’s past year of commit activity
    Python 28 MIT 4 0 1 Updated Apr 26, 2024
  • DeidentiFHIR-Pipeline Public
    UMEssen/DeidentiFHIR-Pipeline’s past year of commit activity
    Java 1 MIT 0 2 0 Updated Apr 17, 2024
  • MM-WS-Scala Public

    A library that implements websocket functionality in Scala 2

    UMEssen/MM-WS-Scala’s past year of commit activity
    Scala 0 0 0 1 Updated Mar 28, 2024
  • BOA-Contrast Public
    UMEssen/BOA-Contrast’s past year of commit activity
    Python 3 MIT 0 2 3 Updated Mar 13, 2024
  • FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.

    UMEssen/FHIR-PYrate’s past year of commit activity
    Python 56 MIT 10 11 4 Updated Nov 23, 2023
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