Merge pull request #138 from UMCarpentries/paper

Write paper to submit to JOSE

.github/workflows/draft-pdf.yml

@@ -0,0 +1,28 @@
+name: paper-pdf
+
+on:
+  push:
+    paths:
+      - paper/*
+
+jobs:
+  paper:
+    runs-on: ubuntu-latest
+    name: Paper Draft
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+      - name: Build draft PDF
+        uses: openjournals/openjournals-draft-action@master
+        with:
+          journal: jose
+          # This should be the path to the paper within your repo.
+          paper-path: paper/paper.md
+      - name: Upload
+        uses: actions/upload-artifact@v1
+        with:
+          name: paper
+          # This is the output path where Pandoc will write the compiled
+          # PDF. Note, this should be the same directory as the input
+          # paper.md
+          path: paper/paper.pdf

.gitignore

@@ -15,3 +15,4 @@ vendor/
 .docker-vendor/
 Gemfile.lock
 .*history
+paper/data/

AUTHORS

@@ -1,4 +1,16 @@
-Kelly Sovacool
 Zena Lapp
-Patrick Schloss
-Maya Lapp
+Kelly L. Sovacool
+Nick Lesniak
+Dana King
+Catherine Barnier
+Matthew Flickinger
+Jule Krüger
+Courtney R. Armour
+Maya M. Lapp
+Jason Tallant
+Rucheng Diao
+Morgan Oneka
+Sarah Tomkovich
+Jacqueline Moltzau Anderson
+Sarah K. Lucas
+Patrick D. Schloss

CITATION

@@ -1,3 +1,4 @@
 Please cite as:
 
-Schloss et al. "U-M Software Carpentry Custom Curriculum". Nov. 2020, https://github.com/umswc/curriculum
+U-M Carpentries: "Introductory Software Carpentry Curriculum with R". Nov. 2020,
+https://github.com/umcarpentries/intro-curriculum-r

LICENSE.md

@@ -1,9 +1,23 @@
 ---
+layout: page
 title: "Licenses"
 ---
+
+The majority of the instructional material and code in this repository is
+new, original work created by the U-M Carpentries instance and is made available
+under the licenses described below.
+Parts of some of the material and code are inspired by or derived from Software
+Carpentry lessons with substantial modifications, which are Copyright © Software
+Carpentry under the [Creative Commons Attribution][cc-by-human] and
+[MIT][mit-license] licenses.
+The scaffolding of this repository is derived from
+[The Carpentries Lesson Example](https://github.com/carpentries/lesson-example);
+their material and code are also made available under the
+[CC BY 4.0 and MIT licenses](https://github.com/carpentries/lesson-example/blob/gh-pages/LICENSE.md).
+
 ## Instructional Material
 
-All Software Carpentry, Data Carpentry, and Library Carpentry instructional material is
+All U-M Carpentries instructional material is
 made available under the [Creative Commons Attribution
 license][cc-by-human]. The following is a human-readable summary of
 (and not a substitute for) the [full legal text of the CC BY 4.0
@@ -21,13 +35,12 @@ license terms.
 
 Under the following terms:
 
-* **Attribution**---You must give appropriate credit (mentioning that
-  your work is derived from work that is Copyright © Software
-  Carpentry and, where practical, linking to
-  http://software-carpentry.org/), provide a [link to the
-  license][cc-by-human], and indicate if changes were made. You may do
-  so in any reasonable manner, but not in any way that suggests the
-  licensor endorses you or your use.
+* **Attribution**---You must give appropriate credit (mentioning that your work
+  is derived from work that is Copyright © U-M Carpentries and, where practical,
+  linking to https://umcarpentries.org/), provide a [link to the
+  license][cc-by-human], and indicate if changes were made. You may do so in any
+  reasonable manner, but not in any way that suggests the licensor endorses you
+  or your use.
 
 **No additional restrictions**---You may not apply legal terms or
 technological measures that legally restrict others from doing
@@ -46,7 +59,7 @@ Notices:
 ## Software
 
 Except where otherwise noted, the example programs and other software
-provided by Software Carpentry and Data Carpentry are made available under the
+provided by U-M Carpentries are made available under the
 [OSI][osi]-approved
 [MIT license][mit-license].
 

paper/paper.bib

@@ -0,0 +1,94 @@
+
+@misc{becker_responding_2016,
+  title = {Responding to Your {{Learners}}},
+  author = {Becker, Erin},
+  year = {2016},
+  month = sep,
+  abstract = {Data Carpentry is a lesson program of The Carpentries that develops and provides data skills training to researchers.},
+  howpublished = {https://datacarpentry.org/blog/2016/09/formative-assessment},
+  journal = {Data Carpentry},
+  language = {en}
+}
+
+@misc{chen_online_2020,
+  title = {Online {{Workshop Logistics}} and {{Screen Layouts}}},
+  author = {Chen, Daniel},
+  year = {2020},
+  month = jun,
+  abstract = {Online workshop logistics and how learners would set up their screens if they only had a single monitor.},
+  howpublished = {https://carpentries.org/blog/2020/06/online-workshop-logistics-and\_screen-layouts/},
+  journal = {The Carpentries},
+  language = {en}
+}
+
+@misc{robinson_teach_2017,
+  title = {Teach the Tidyverse to Beginners},
+  author = {Robinson, David},
+  year = {2017},
+  month = jul,
+  abstract = {A few years ago, I wrote a post Don't teach built-in plotting to beginners (teach ggplot2). I argued that ggplot2 was not an advanced approach meant for experts, but rather a suitable introduction to data visualization.},
+  howpublished = {http://varianceexplained.org/r/teach-tidyverse/},
+  journal = {Variance Explained},
+  language = {en}
+}
+
+@misc{the_carpentries_carpentries_2018,
+  title = {The {{Carpentries Handbook}}},
+  author = {{The Carpentries}},
+  year = {2018},
+  howpublished = {https://docs.carpentries.org/index.html}
+}
+
+@misc{the_carpentries_live_2018,
+  title = {Live {{Coding}} Is a {{Skill}}},
+  author = {{The Carpentries}},
+  year = {2018},
+  howpublished = {https://carpentries.github.io/instructor-training/14-live/\#sticky-notes},
+  journal = {Instructor Training},
+  language = {en}
+}
+
+@article{wickham_welcome_2019,
+  title = {Welcome to the {{Tidyverse}}},
+  author = {Wickham, Hadley and Averick, Mara and Bryan, Jennifer and Chang, Winston and McGowan, Lucy and Fran{\c c}ois, Romain and Grolemund, Garrett and Hayes, Alex and Henry, Lionel and Hester, Jim and Kuhn, Max and Pedersen, Thomas and Miller, Evan and Bache, Stephan and M{\"u}ller, Kirill and Ooms, Jeroen and Robinson, David and Seidel, Dana and Spinu, Vitalie and Takahashi, Kohske and Vaughan, Davis and Wilke, Claus and Woo, Kara and Yutani, Hiroaki},
+  year = {2019},
+  month = nov,
+  volume = {4},
+  pages = {1686},
+  issn = {2475-9066},
+  doi = {10.21105/joss.01686},
+  file = {/Volumes/GoogleDrive/My Drive/Zotero/storage/JXLZ6VKP/Wickham et al. - 2019 - Welcome to the Tidyverse.pdf;/Volumes/GoogleDrive/My Drive/Zotero/storage/TDQ3CKIW/joss.html},
+  journal = {Journal of Open Source Software},
+  language = {en},
+  number = {43}
+}
+
+@article{wilson_software_2016,
+  title = {Software {{Carpentry}}: Lessons Learned},
+  shorttitle = {Software {{Carpentry}}},
+  author = {Wilson, Greg},
+  year = {2016},
+  month = jan,
+  volume = {3},
+  pages = {62},
+  issn = {2046-1402},
+  doi = {10.12688/f1000research.3-62.v2},
+  abstract = {Since its start in 1998, Software Carpentry has evolved from a~week-long training course at the US national laboratories into a~worldwide volunteer effort to improve researchers' computing~skills. This paper explains what we have learned along the way, the~challenges we now face, and our plans for the future.},
+  file = {/Volumes/GoogleDrive/My Drive/Zotero/storage/X4KASHTT/Wilson_2016_F1000Res.pdf},
+  journal = {F1000Res},
+  keywords = {Software Carpentry},
+  language = {en}
+}
+
+@book{xie_r_2018,
+  title = {R {{Markdown}}: {{The Definitive Guide}}},
+  shorttitle = {R {{Markdown}}},
+  author = {Xie, Yihui and Allaire, J. J. and Grolemund, Garrett},
+  year = {2018},
+  publisher = {{Taylor \& Francis, CRC Press}},
+  abstract = {R Markdown: The Definitive Guide is the first official book authored by the core R Markdown developers that provides a comprehensive and accurate reference to the R Markdown ecosystem. With R Markdown, you can easily create reproducible data analysis reports, presentations, dashboards, interactive applications, books, dissertations, websites, and journal articles, while enjoying the simplicity of Markdown and the great power of R and other languages. In this book, you will learn Basics: Syntax of Markdown and R code chunks, how to generate figures and tables, and how to use other computing languages Built-in output formats of R Markdown: PDF/HTML/Word/RTF/Markdown documents and ioslides/Slidy/Beamer/PowerPoint presentations Extensions and applications: Dashboards, Tufte handouts, xaringan/reveal.js presentations, websites, books, journal articles, and interactive tutorials Advanced topics: Parameterized reports, HTML widgets, document templates, custom output formats, and Shiny documents. Yihui Xie is a software engineer at RStudio. He has authored and co-authored several R packages, including knitr, rmarkdown, bookdown, blogdown, shiny, xaringan, and animation. He has published three other books, Dynamic Documents with R and knitr, bookdown: Authoring Books and Technical Documents with R Markdown, and blogdown: Creating Websites with R Markdown. J.J. Allaire is the founder of RStudio and the creator of the RStudio IDE. He is an author of several packages in the R Markdown ecosystem including rmarkdown, flexdashboard, learnr, and radix. Garrett Grolemund is the co-author of R for Data Science and author of Hands-On Programming with R. He wrote the lubridate R package and works for RStudio as an advocate who trains engineers to do data science with R and the Tidyverse.},
+  isbn = {978-1-138-35933-8},
+  language = {English}
+}
+
+