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@Transipedia

ANR Transipedia

ANR Transipedia

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  1. dekupl dekupl Public

    Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

    15 2

Repositories

Showing 10 of 22 repositories
  • Reindeer-use-cases Public
    Transipedia/Reindeer-use-cases’s past year of commit activity
    0 0 0 0 Updated Nov 25, 2024
  • KamScan Public

    A simple Python script for scanning a kmer count matrix and select lines with desired statistics

    Transipedia/KamScan’s past year of commit activity
    Python 2 0 0 0 Updated Nov 21, 2024
  • Annotate-contigs Public

    Generalized contig annotation (dekupl-annot 2.0 in python)

    Transipedia/Annotate-contigs’s past year of commit activity
    Python 3 0 1 0 Updated Nov 19, 2024
  • kmerator Public

    Prototype for decomposition of transcript or gene sequences and extraction of their specific k-mers

    Transipedia/kmerator’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 23, 2024
  • kmerexplor Public

    KmerExploR provides information of a requested RNA-seq dataset Set.

    Transipedia/kmerexplor’s past year of commit activity
    Python 0 GPL-3.0 0 1 0 Updated Oct 15, 2024
  • publication-ccle Public

    Scripts and data for the CCLE Transipedia publication

    Transipedia/publication-ccle’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 20, 2024
  • mkprobe Public

    Build contigs from contiguous kmers stored as fasta files

    Transipedia/mkprobe’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 17, 2024
  • KaMRaT Public
    Transipedia/KaMRaT’s past year of commit activity
    C++ 12 2 1 0 Updated Jun 19, 2024
  • REINDEER-count-validation Public
    Transipedia/REINDEER-count-validation’s past year of commit activity
    R 0 0 0 0 Updated Feb 6, 2024
  • fos_builder Public

    companon tools for Transipedia website and Reindeer.

    Transipedia/fos_builder’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 5, 2024
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