maybe-usefull-stuff

A repository with scripts that could be usefull for others.

Use at your own risk.

how to install checkm using a virtual environment

See these instructions

a script to parse the data from microbecensus

python2: AVG_output_parser.py

Calculation dN/dS ratios from bacterial genomes

dN-dS testing bacterial genomes

a phylogseq tutorial

viewing the html page:Phyloseq tutorial html page

viewing the github formated document:Phyloseq github

Comparing bacterial genomes with MASH and FastANI

Comparison of Vibrionales genome similarity