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The Jackson Laboratory

The Jackson Laboratory: Leading the search for tomorrow's cures.

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  1. SVE SVE Public

    Python 51 12

  2. Picky Picky Public

    Structural Variants Pipeline for Long Reads

    Perl 44 6

  3. ezomero ezomero Public

    A module with convenience functions for writing Python code that interacts with OMERO.

    Python 39 13

  4. JAXBD2K-ShortCourse JAXBD2K-ShortCourse Public

    This repository contains course materials from JAX-BD2K workshop.

    Shell 31 6

  5. ChIA-PIPE ChIA-PIPE Public

    ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization

    C 27 12

  6. zarrdataset zarrdataset Public

    A dataset for loading zarr files to be used in machine learning training pipelines

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Repositories

Showing 10 of 372 repositories
  • activelearning Public

    Active learning tools for fine-tuning ML models

    TheJacksonLaboratory/activelearning’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Nov 27, 2024
  • quilt-nf Public
    TheJacksonLaboratory/quilt-nf’s past year of commit activity
    R 1 0 0 0 Updated Nov 27, 2024
  • KOMP_Images_ETL Public
    TheJacksonLaboratory/KOMP_Images_ETL’s past year of commit activity
    Python 0 0 0 0 Updated Nov 26, 2024
  • geneweaver-legacy Public
    TheJacksonLaboratory/geneweaver-legacy’s past year of commit activity
    JavaScript 1 0 1 1 Updated Nov 26, 2024
  • singularity-workshop-2023 Public
    TheJacksonLaboratory/singularity-workshop-2023’s past year of commit activity
    0 0 0 0 Updated Nov 26, 2024
  • DccXmlGenerator Public

    This is the Python version of the DCC XML file generator.

    TheJacksonLaboratory/DccXmlGenerator’s past year of commit activity
    Python 0 0 0 0 Updated Nov 25, 2024
  • intro_cellprofiler_workshop Public

    Introduction slides for an Intro to CellProfiler workshop

    TheJacksonLaboratory/intro_cellprofiler_workshop’s past year of commit activity
    0 0 0 0 Updated Nov 22, 2024
  • rit-imageanalysis-containers Public

    Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster

    TheJacksonLaboratory/rit-imageanalysis-containers’s past year of commit activity
    Shell 3 MIT 3 2 2 Updated Nov 21, 2024
  • STQ Public

    Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

    TheJacksonLaboratory/STQ’s past year of commit activity
    Python 14 MIT 0 2 0 Updated Nov 20, 2024
  • geneweaver-api Public

    A system for the integration and analysis of heterogeneous functional genomics data.

    TheJacksonLaboratory/geneweaver-api’s past year of commit activity
    Python 5 Apache-2.0 0 0 0 Updated Nov 20, 2024
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