fix the issue in cleopatra version (#104)

* fix the issue in cleopatra version

* update miniconda workflow action

* activate use mamba

* update notebooks

* update dependencies

* reduce loguru version to match pypi and conda-forge

* update the name attribute in the ogr.DataSource

* update gdal in the workflow

* add libgdal-netcdf, libgdal-hdf4 to the conda dependencies

* update notebook

* ogr.Open now returns a Dataset not DataSource

* update check list files

* update gdal in readthedocs

.github/workflows/conda-deployment.yml

@@ -13,14 +13,14 @@ jobs:
       OS: ${{ matrix.os }}
 
     steps:
-      - uses: actions/checkout@v3
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: actions/checkout@v4
+      - uses: conda-incubator/setup-miniconda@v3
         with:
           mamba-version: "*"
-          #use-mamba: true
+          use-mamba: true
           auto-update-conda: false
-          environment-file: environment.yml
           auto-activate-base: false
+          environment-file: environment.yml
           activate-environment: test
           python-version: ${{ matrix.python-version }}
           channels: conda-forge,defaults
@@ -50,14 +50,14 @@ jobs:
       OS: ${{ matrix.os }}
 
     steps:
-      - uses: actions/checkout@v3
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: actions/checkout@v4
+      - uses: conda-incubator/setup-miniconda@v3
         with:
           mamba-version: "*"
-          #use-mamba: true
+          use-mamba: true
           auto-update-conda: false
-          environment-file: environment-optional-packages.yml
           auto-activate-base: false
+          environment-file: environment-optional-packages.yml
           activate-environment: test
           python-version: ${{ matrix.python-version }}
           channels: conda-forge,defaults

.github/workflows/pypi-deployment.yml

@@ -24,7 +24,7 @@ jobs:
         run: |
             python -m pip install --upgrade pip
             pip install --no-cache-dir Cython
-            pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL==3.9.0
+            pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL==3.10.0
 
       - name: Test GDAL installation
         run: |
@@ -64,7 +64,7 @@ jobs:
         run: |
             python -m pip install --upgrade pip
             pip install --no-cache-dir Cython
-            pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL==3.9.0
+            pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL==3.10.0
 
       - name: Test GDAL installation
         run: |

HISTORY.rst

@@ -229,3 +229,10 @@ Deprecated
 *Cropping a raster using a polygon is done now directly using gdal.wrap nand the the `_crop_with_polygon_by_rasterizing`
 is deprecated.
 * rename the interpolation method `nearest neighbour` to `nearest neighbor`.
+
+0.7.1 (2024-12-07)
+------------------
+* update `cleopatra` package version to 0.5.1 and update the api to use the new version.
+* update the miniconda workflow in ci.
+* update gdal to 3.10 and update the DataSource to Dataset in the `FeatureCollection.file_name`.
+* add `libgdal-netcdf` and `libgdal-hdf4` to the conda dependencies.

README.md

@@ -46,7 +46,7 @@ Installing pyramids
 Installing `pyramids` from the `conda-forge` channel can be achieved by:
 
 ```
-conda install -c conda-forge pyramids=0.7.0
+conda install -c conda-forge pyramids=0.7.1
 ```
 
 It is possible to list all the versions of `pyramids` available on your platform with:
@@ -68,7 +68,7 @@ pip install git+https://github.com/Serapieum-of-alex/pyramids
 to install the last release, you can easily use pip
 
 ```
-pip install pyramids-gis==0.7.0
+pip install pyramids-gis==0.7.1
 ```
 
 Quick start

docs/environment.yml

@@ -5,7 +5,7 @@ dependencies:
   - numpy >=2.0.0
   - numpydoc==1.1.0
   - typing-extensions==3.10.*
-  - gdal==3.9.0
+  - gdal==3.10.0
   - pip:
     - pydata_sphinx_theme>=0.15.2
     - sphinxcontrib-napoleon

docs/source/installation.rst

@@ -8,9 +8,9 @@ dependencies
 Required dependencies
 =====================
 
-- Python (3.9 or later)
+- Python (3.11 or later)
 - `numpy <https://www.numpy.org/>`__ (1.21 or later)
-- `GDAL <https://gdal.org/>`__ (3.6.2 or later)
+- `GDAL <https://gdal.org/>`__ (3.9.0 or later)
 - `pandas <https://pandas.pydata.org/>`__ (2 or later)
 - `geopandas <https://geopandas.org/>`__  (0.12.2 or later)
 - `Shapely <https://shapely.readthedocs.io/>`__ (1.8.4 or later)

environment-optional-packages.yml

@@ -1,17 +1,19 @@
 channels:
   - conda-forge
 dependencies:
-  - numpy >=2.0.0
+  - numpy >=2.1.3
   - hpc >=0.1.4
-  - pip >=24.0.0
-  - gdal ==3.9.0
-  - pandas >=2.1.0
-  - geopandas >=0.14.1
-  - Shapely >=2.0.2
-  - pyproj >=3.6.1
-  - cleopatra >=0.4.2
-  - PyYAML >=6.0.1
+  - pip >=24.3.1
+  - gdal ==3.10.0
+  - libgdal-netcdf ==3.10.0
+  - libgdal-hdf4  ==3.10.0
+  - pandas >=2.2.3
+  - geopandas >=1.0.1
+  - Shapely >=2.0.6
+  - pyproj >=3.7.0
+  - cleopatra >=0.5.1
+  - PyYAML >=6.0.2
   - loguru >=0.7.2
-  - pytest >=8.2.2
-  - pytest-cov >=5.0.0
+  - pytest >=8.3.4
+  - pytest-cov >=6.0.0
   - nbval >=0.11.0

environment.yml

@@ -1,16 +1,18 @@
 channels:
   - conda-forge
 dependencies:
-  - numpy >=2.0.0
+  - numpy >=2.1.3
   - hpc >=0.1.4
-  - pip >=24.0.0
-  - gdal ==3.9.0
-  - pandas >=2.1.0
-  - geopandas >=0.14.1
-  - Shapely >=2.0.2
-  - pyproj >=3.6.1
-  - PyYAML >=6.0.1
+  - pip >=24.3.1
+  - gdal ==3.10.0
+  - libgdal-netcdf ==3.10.0
+  - libgdal-hdf4  ==3.10.0
+  - pandas >=2.2.3
+  - geopandas >=1.0.1
+  - Shapely >=2.0.6
+  - pyproj >=3.7.0
+  - PyYAML >=6.0.2
   - loguru >=0.7.2
-  - pytest >=8.2.2
-  - pytest-cov >=5.0.0
+  - pytest >=8.3.4
+  - pytest-cov >=6.0.0
   - nbval >=0.11.0