add install statement in the test step #429
Workflow file for this run
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| name: conda-deployment | |
| on: [push] | |
| jobs: | |
| Main-package: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| env: | |
| OS: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| mamba-version: "*" | |
| use-mamba: true | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| environment-file: environment.yml | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| channel-priority: true | |
| show-channel-urls: true | |
| - name: Install dev-dependencies | |
| run: | | |
| pip install .[dev] | |
| - name: Generate coverage report | |
| shell: bash -el {0} | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| pytest -sv -m "not plot" | |
| Optional-packages: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| env: | |
| OS: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| mamba-version: "*" | |
| use-mamba: true | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| environment-file: environment-optional-packages.yml | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| channel-priority: true | |
| show-channel-urls: true | |
| - name: Install dev-dependencies | |
| run: | | |
| pip install .[dev] | |
| - name: Generate coverage report | |
| shell: bash -el {0} | |
| run: | | |
| conda activate test | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| pip install . | |
| pytest -sv | |
| - name: test Jupyter notebook | |
| shell: bash -el {0} | |
| run: | | |
| conda activate test | |
| pip install . | |
| pytest --nbval -k ".ipynb" |