dependencies (#9)

* update dependencies

* update

* update

* correct schipy version

* update pypi workflow

* downgrade pip to 24.0

* downgrade pip to 24.0

* add setuptools to dependencies

* remove python from the environment.yml and add conda workflow

* latest pip in conda-forge is 24.0

* rename job

* add .run to ignore

.github/workflows/conda-deployment.yml

@@ -0,0 +1,41 @@
+name: conda-deployment
+
+on: [push]
+
+jobs:
+   Run:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ["3.11", "3.12"]
+    env:
+      OS: ${{ matrix.os }}
+
+    steps:
+      - uses: actions/checkout@v3
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          mamba-version: "*"
+          #use-mamba: true
+          auto-update-conda: false
+          environment-file: environment.yml
+          auto-activate-base: false
+          activate-environment: test
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge,defaults
+          channel-priority: true
+          show-channel-urls: true
+
+      - name: Install dev-dependencies
+        run: |
+            python -m pip install -r requirements-dev.txt
+
+      - name: Generate coverage report
+        shell: bash -el {0}
+        run: |
+          conda info
+          conda list
+          conda config --show-sources
+          conda config --show
+          pytest -vvv --cov=hpc

.github/workflows/pypi-deployment.yml

@@ -1,18 +1,13 @@
-name: Pypi deployment
-on:
-    push:
-        branches:
-            - main
-    pull_request:
-        branches:
-            - main
+name: pypi-deployment
+on: [push]
+
 jobs:
   Run:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: ["3.9", "3.10", "3.11"]
+        os: [ubuntu-latest] #, windows-latest, macos-latest
+        python-version: ["3.11", "3.12"]
 
     steps:
       - uses: actions/checkout@v3
@@ -29,6 +24,10 @@ jobs:
 
       - name: Generate coverage report
         run: |
+          conda info
+          conda list
+          conda config --show-sources
+          conda config --show
           python -m pytest -vvv --cov=hpc --cov-report=xml
 
       - name: Upload coverage reports to Codecov with GitHub Action

.gitignore

@@ -128,3 +128,5 @@ dmypy.json
 # Pyre type checker
 .pyre/
 .idea/*
+.vscode/*
+.run/*

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 fail_fast: true
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
       - id: end-of-file-fixer
         name: "[py -  check] validate yaml"
@@ -58,7 +58,7 @@ repos:
         files: ^Hapi/
 
   - repo: https://github.com/pycqa/flake8
-    rev: 6.1.0
+    rev: 7.1.0
     hooks:
       - id: flake8
         name: "[py   - check] flake8"
@@ -70,7 +70,7 @@ repos:
   #  hooks:
   #    - id: black
   - repo: https://github.com/ambv/black
-    rev: 23.10.1
+    rev: 24.4.2
     hooks:
       - id: black
         name: "[py   - format] black"

HISTORY.rst

@@ -22,3 +22,9 @@ History
 ------------------
 
 * Update dependencies
+
+
+0.1.3 (2024-06-24)
+------------------
+
+* Update dependencies

environment.yml

@@ -1,8 +1,9 @@
 channels:
   - conda-forge
 dependencies:
-  - python >=3.11
-  - numpy >=1.25.2
-  - pip >=23.2.1
-  - pytest >=7.4.3
-  - pytest-cov >=4.1.0
+  - numpy >=2.0.0
+  - scipy >=1.13.1
+  - pip >=24.0.0
+  - pytest >=8.2.2
+  - pytest-cov >=5.0.0
+  - setuptools >=70.1.1

requirements-dev.txt

@@ -1,12 +1,12 @@
-black >=23.10.1
+black >=24.4.2
 darglint >=1.8.1
 flake8-bandit >=4.1.1
-flake8-bugbear >=23.9.16
+flake8-bugbear >=24.4.26
 flake8-docstrings >=1.7.0
 flake8-rst-docstrings >=0.3.0
-pep8-naming >=0.13.3
-pre-commit >=3.5.0
-pre-commit-hooks >=4.5.0
-pytest >=7.4.3
-pytest-cov >=4.1.0
-reorder-python-imports >=3.12.0
+pep8-naming >=0.14.1
+pre-commit >=3.7.1
+pre-commit-hooks >=4.6.0
+pytest >=8.2.2
+pytest-cov >=5.0.0
+reorder-python-imports >=3.13.0

requirements.txt

@@ -1,2 +1,6 @@
-numpy >=1.25.2
-pip >=6.2.1
+numpy >=2.0.0
+pip >=24.0.0
+pytest >=8.2.2
+pytest-cov >=5.0.0
+scipy >=1.13.1
+setuptools >=70.1.1

setup.py

@@ -11,7 +11,7 @@
 
 setup(
     name="hpc-utils",
-    version="0.1.3",
+    version="0.1.4",
     description="numpy utility package",
     author="Mostafa Farrag",
     author_email="[email protected]",