feat: better inbounds handling and propagtion in generated functions

src/systems/abstractsystem.jl

@@ -172,6 +172,9 @@ function generate_custom_function(sys::AbstractSystem, exprs, dvs = unknowns(sys
     if wrap_code === nothing
         wrap_code = isscalar ? identity : (identity, identity)
     end
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     pre, sol_states = get_substitutions_and_solved_unknowns(sys, isscalar ? [exprs] : exprs)
     if postprocess_fbody === nothing
         postprocess_fbody = pre
@@ -226,6 +229,13 @@ function wrap_assignments(isscalar, assignments; let_block = false)
     end
 end
 
+function wrap_inbounds(isscalar)
+    function wrapper(expr)
+        Func(expr.args, [], :(@inbounds begin; $(toexpr(expr.body)); end))
+    end
+    return isscalar ? wrapper : (wrapper, wrapper)
+end
+
 function wrap_parameter_dependencies(sys::AbstractSystem, isscalar)
     wrap_assignments(isscalar, [eq.lhs ← eq.rhs for eq in parameter_dependencies(sys)])
 end
@@ -785,7 +795,7 @@ end
 SymbolicIndexingInterface.supports_tuple_observed(::AbstractSystem) = true
 
 function SymbolicIndexingInterface.observed(
-        sys::AbstractSystem, sym; eval_expression = false, eval_module = @__MODULE__)
+        sys::AbstractSystem, sym; eval_expression = false, eval_module = @__MODULE__, checkbounds = true)
     if has_index_cache(sys) && (ic = get_index_cache(sys)) !== nothing
         if sym isa Symbol
             _sym = get(ic.symbol_to_variable, sym, nothing)
@@ -808,7 +818,7 @@ function SymbolicIndexingInterface.observed(
             end
         end
     end
-    _fn = build_explicit_observed_function(sys, sym; eval_expression, eval_module)
+    _fn = build_explicit_observed_function(sys, sym; eval_expression, eval_module, checkbounds)
 
     if is_time_dependent(sys)
         return _fn
@@ -1671,11 +1681,12 @@ struct ObservedFunctionCache{S}
     steady_state::Bool
     eval_expression::Bool
     eval_module::Module
+    checkbounds::Bool
 end
 
 function ObservedFunctionCache(
-        sys; steady_state = false, eval_expression = false, eval_module = @__MODULE__)
-    return ObservedFunctionCache(sys, Dict(), steady_state, eval_expression, eval_module)
+        sys; steady_state = false, eval_expression = false, eval_module = @__MODULE__, checkbounds = true)
+    return ObservedFunctionCache(sys, Dict(), steady_state, eval_expression, eval_module, checkbounds)
 end
 
 # This is hit because ensemble problems do a deepcopy
@@ -1694,7 +1705,7 @@ function (ofc::ObservedFunctionCache)(obsvar, args...)
     obs = get!(ofc.dict, value(obsvar)) do
         SymbolicIndexingInterface.observed(
             ofc.sys, obsvar; eval_expression = ofc.eval_expression,
-            eval_module = ofc.eval_module)
+            eval_module = ofc.eval_module, checkbounds = ofc.checkbounds)
     end
     if ofc.steady_state
         obs = let fn = obs

src/systems/callbacks.jl

@@ -583,9 +583,14 @@ function compile_condition(cb::SymbolicDiscreteCallback, sys, dvs, ps;
         cmap = map(x -> x => getdefault(x), cs)
         condit = substitute(condit, cmap)
     end
+    if !get(kwargs, :checkbounds, false)
+        inbounds_wrapper = wrap_inbounds(!(condit isa AbstractArray))
+    else
+        inbounds_wrapper = condit isa AbstractArray ? (identity, identity) : identity
+    end
     expr = build_function(
         condit, u, t, p...; expression = Val{true},
-        wrap_code = condition_header(sys) .∘
+        wrap_code = condition_header(sys) .∘ inbounds_wrapper .∘
                     wrap_array_vars(sys, condit; dvs, ps, inputs = true) .∘
                     wrap_parameter_dependencies(sys, !(condit isa AbstractArray)),
         kwargs...)
@@ -671,6 +676,7 @@ function compile_affect(eqs::Vector{Equation}, cb, sys, dvs, ps; outputidxs = no
         t = get_iv(sys)
         integ = gensym(:MTKIntegrator)
         pre = get_preprocess_constants(rhss)
+        inbounds_wrapper = get(kwargs, :checkbounds, false) ? (identity, identity) : wrap_inbounds(false)
         rf_oop, rf_ip = build_function(rhss, u, p..., t; expression = Val{true},
             wrap_code = callback_save_header(sys, cb) .∘
                         add_integrator_header(sys, integ, outvar) .∘

src/systems/diffeqs/abstractodesystem.jl

@@ -116,6 +116,9 @@ function generate_tgrad(
     else
         (ps,)
     end
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, tgrad; dvs, ps) .∘
                 wrap_parameter_dependencies(sys, !(tgrad isa AbstractArray))
     return build_function(tgrad,
@@ -137,6 +140,9 @@ function generate_jacobian(sys::AbstractODESystem, dvs = unknowns(sys),
     else
         (ps,)
     end
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, jac; dvs, ps) .∘
                 wrap_parameter_dependencies(sys, false)
     return build_function(jac,
@@ -208,6 +214,10 @@ function generate_function(sys::AbstractODESystem, dvs = unknowns(sys),
     p = map.(x -> time_varying_as_func(value(x), sys), reorder_parameters(sys, ps))
     t = get_iv(sys)
 
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
+
     if isdde
         build_function(rhss, u, DDE_HISTORY_FUN, p..., t; kwargs...,
             wrap_code = wrap_code .∘ wrap_mtkparameters(sys, false, 3) .∘
@@ -439,7 +449,7 @@ function DiffEqBase.ODEFunction{iip, specialize}(sys::AbstractODESystem,
         ArrayInterface.restructure(u0 .* u0', M)
     end
 
-    observedfun = ObservedFunctionCache(sys; steady_state, eval_expression, eval_module)
+    observedfun = ObservedFunctionCache(sys; steady_state, eval_expression, eval_module, checkbounds)
 
     jac_prototype = if sparse
         uElType = u0 === nothing ? Float64 : eltype(u0)
@@ -531,7 +541,7 @@ function DiffEqBase.DAEFunction{iip}(sys::AbstractODESystem, dvs = unknowns(sys)
         _jac = nothing
     end
 
-    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module)
+    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module, checkbounds = get(kwargs, :checkbounds, false))
 
     jac_prototype = if sparse
         uElType = u0 === nothing ? Float64 : eltype(u0)

src/systems/diffeqs/odesystem.jl

@@ -629,6 +629,12 @@ function build_explicit_observed_function(sys, ts;
         oop_mtkp_wrapper = mtkparams_wrapper
     end
 
+    if !checkbounds
+        inbounds_wrapper = wrap_inbounds(false)
+    else
+        inbounds_wrapper = (identity, identity)
+    end
+
     # Need to keep old method of building the function since it uses `output_type`,
     # which can't be provided to `build_function`
     return_value = if isscalar
@@ -641,14 +647,14 @@ function build_explicit_observed_function(sys, ts;
     oop_fn = Func(args, [],
                  pre(Let(obsexprs,
                      return_value,
-                     false))) |> array_wrapper[1] |> oop_mtkp_wrapper |> toexpr
+                     false))) |> array_wrapper[1] |> oop_mtkp_wrapper |> inbounds_wrapper[1] |> toexpr
     oop_fn = expression ? oop_fn : eval_or_rgf(oop_fn; eval_expression, eval_module)
 
     if !isscalar
         iip_fn = build_function(ts,
             args...;
             postprocess_fbody = pre,
-            wrap_code = mtkparams_wrapper .∘ array_wrapper .∘
+            wrap_code = inbounds_wrapper .∘ mtkparams_wrapper .∘ array_wrapper .∘
                         wrap_assignments(isscalar, obsexprs),
             expression = Val{true})[2]
         if !expression

src/systems/diffeqs/sdesystem.jl

@@ -589,7 +589,7 @@ function DiffEqBase.SDEFunction{iip, specialize}(sys::SDESystem, dvs = unknowns(
     M = calculate_massmatrix(sys)
     _M = (u0 === nothing || M == I) ? M : ArrayInterface.restructure(u0 .* u0', M)
 
-    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module)
+    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module, checkbounds = get(kwargs, :checkbounds, false))
 
     SDEFunction{iip, specialize}(f, g,
         sys = sys,

src/systems/discrete_system/discrete_system.jl

@@ -234,6 +234,9 @@ end
 function generate_function(
         sys::DiscreteSystem, dvs = unknowns(sys), ps = parameters(sys); wrap_code = identity, kwargs...)
     exprs = [eq.rhs for eq in equations(sys)]
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, exprs) .∘
                 wrap_parameter_dependencies(sys, false)
     generate_custom_function(sys, exprs, dvs, ps; wrap_code, kwargs...)
@@ -327,7 +330,7 @@ function SciMLBase.DiscreteFunction{iip, specialize}(
         f = SciMLBase.wrapfun_iip(f, (u0, u0, p, t))
     end
 
-    observedfun = ObservedFunctionCache(sys)
+    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module, checkbounds = get(kwargs, :checkbounds, false))
 
     DiscreteFunction{iip, specialize}(f;
         sys = sys,

src/systems/jumps/jumpsystem.jl

@@ -406,7 +406,7 @@ function DiffEqBase.DiscreteProblem(sys::JumpSystem, u0map, tspan::Union{Tuple,
         t = tspan === nothing ? nothing : tspan[1], use_union, tofloat = false, check_length = false)
     f = DiffEqBase.DISCRETE_INPLACE_DEFAULT
 
-    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module)
+    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module, checkbounds = get(kwargs, :checkbounds, false))
 
     df = DiscreteFunction{true, true}(f; sys = sys, observed = observedfun)
     DiscreteProblem(df, u0, tspan, p; kwargs...)
@@ -504,7 +504,7 @@ function DiffEqBase.ODEProblem(sys::JumpSystem, u0map, tspan::Union{Tuple, Nothi
             t = tspan === nothing ? nothing : tspan[1], use_union, tofloat = false,
             check_length = false)
         f = (du, u, p, t) -> (du .= 0; nothing)
-        observedfun = ObservedFunctionCache(sys; eval_expression, eval_module)
+        observedfun = ObservedFunctionCache(sys; eval_expression, eval_module, checkbounds = get(kwargs, :checkbounds, false))
         df = ODEFunction(f; sys, observed = observedfun)
         return ODEProblem(df, u0, tspan, p; kwargs...)
     end

src/systems/nonlinear/nonlinearsystem.jl

@@ -227,6 +227,9 @@ function generate_jacobian(
     jac = calculate_jacobian(sys, sparse = sparse, simplify = simplify)
     pre, sol_states = get_substitutions_and_solved_unknowns(sys)
     p = reorder_parameters(sys, ps)
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, jac; dvs = vs, ps) .∘
                 wrap_parameter_dependencies(sys, false)
     return build_function(
@@ -251,6 +254,9 @@ function generate_hessian(
     hess = calculate_hessian(sys, sparse = sparse, simplify = simplify)
     pre = get_preprocess_constants(hess)
     p = reorder_parameters(sys, ps)
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, hess; dvs = vs, ps) .∘
                 wrap_parameter_dependencies(sys, false)
     return build_function(hess, vs, p...; postprocess_fbody = pre, wrap_code, kwargs...)
@@ -266,6 +272,9 @@ function generate_function(
         dvs′ = only(dvs)
     end
     pre, sol_states = get_substitutions_and_solved_unknowns(sys)
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, rhss; dvs, ps) .∘
                 wrap_parameter_dependencies(sys, scalar)
     p = reorder_parameters(sys, value.(ps))
@@ -342,7 +351,7 @@ function SciMLBase.NonlinearFunction{iip}(sys::NonlinearSystem, dvs = unknowns(s
         _jac = nothing
     end
 
-    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module)
+    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module, checkbounds = get(kwargs, :checkbounds, false))
 
     if length(dvs) == length(equations(sys))
         resid_prototype = nothing
@@ -383,7 +392,7 @@ function SciMLBase.IntervalNonlinearFunction(
     f(u, p) = f_oop(u, p)
     f(u, p::MTKParameters) = f_oop(u, p...)
 
-    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module)
+    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module, checkbounds = get(kwargs, :checkbounds, false))
 
     IntervalNonlinearFunction{false}(f; observed = observedfun, sys = sys)
 end
@@ -579,6 +588,9 @@ function SCCNonlinearFunction{iip}(
     cmap, cs = get_cmap(sys)
     cmap_assignments = [eq.lhs ← eq.rhs for eq in cmap]
     rhss = [eq.rhs - eq.lhs for eq in _eqs]
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_assignments(false, cmap_assignments) .∘
                 (wrap_array_vars(sys, rhss; dvs = _dvs, cachesyms)) .∘
                 wrap_parameter_dependencies(sys, false) .∘

src/systems/optimization/optimizationsystem.jl

@@ -199,6 +199,9 @@ function generate_gradient(sys::OptimizationSystem, vs = unknowns(sys),
     grad = calculate_gradient(sys)
     pre = get_preprocess_constants(grad)
     p = reorder_parameters(sys, ps)
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, grad; dvs = vs, ps) .∘
                 wrap_parameter_dependencies(sys, !(grad isa AbstractArray))
     return build_function(grad, vs, p...; postprocess_fbody = pre, wrap_code,
@@ -219,6 +222,9 @@ function generate_hessian(
     end
     pre = get_preprocess_constants(hess)
     p = reorder_parameters(sys, ps)
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, hess; dvs = vs, ps) .∘
                 wrap_parameter_dependencies(sys, false)
     return build_function(hess, vs, p...; postprocess_fbody = pre, wrap_code,
@@ -235,6 +241,9 @@ function generate_function(sys::OptimizationSystem, vs = unknowns(sys),
     else
         (ps,)
     end
+    if !get(kwargs, :checkbounds, false)
+        wrap_code = wrap_code .∘ wrap_inbounds(false)
+    end
     wrap_code = wrap_code .∘ wrap_array_vars(sys, eqs; dvs = vs, ps) .∘
                 wrap_parameter_dependencies(sys, !(eqs isa AbstractArray))
     return build_function(eqs, vs, p...; wrap_code,
@@ -419,7 +428,7 @@ function DiffEqBase.OptimizationProblem{iip}(sys::OptimizationSystem, u0map,
         hess_prototype = nothing
     end
 
-    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module)
+    observedfun = ObservedFunctionCache(sys; eval_expression, eval_module, checkbounds)
 
     if length(cstr) > 0
         @named cons_sys = ConstraintsSystem(cstr, dvs, ps; checks)