Add additional script and update changelog for patch release

SPAAM-community · Aug 30, 2022 · fd91e08 · fd91e08
1 parent a7abec1
commit fd91e08
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Showing 3 changed files with 10 additions and 7 deletions.
diff --git a/.gitignore b/.gitignore
@@ -6,4 +6,5 @@
 Rplot001.pdf
 playground/
 .~lock*
-AncientMetagenomeDir-*.zip
+AncientMetagenomeDir-v*.zip
+AncientMetagenomeDir_v*.zip
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,7 +5,7 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project follows to [Calendar Versioning](https://calver.org/).
 
-## v22.09.1: Pyu Ancient Cities
+## v22.09.2: Pyu Ancient Cities
 
 Correction: Correct release ZIP upload
 

diff --git a/assets/utility/release_stats_statement_generator.R b/assets/utility/release_stats_statement_generator.R
@@ -1,17 +1,17 @@
 library(tidyverse)
 
-previous_tag <- "v21.06"
+previous_tag <- "v21.09"
 release_tag <- "master"
-new_release <- "v21.09"
+new_release <- "v22.09"
 
 previous_env <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", previous_tag, "/ancientmetagenome-environmental/ancientmetagenome-environmental.tsv"))
 previous_microb <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", previous_tag, "/ancientmetagenome-hostassociated/ancientmetagenome-hostassociated.tsv"))
 previous_single <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", previous_tag, "/ancientsinglegenome-hostassociated/ancientsinglegenome-hostassociated.tsv"))
 previous_pubs <- c(previous_env$publication_doi, previous_microb$publication_doi, previous_single$publication_doi) %>% unique() %>% length
 
-new_env <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", release_tag, "/ancientmetagenome-environmental/ancientmetagenome-environmental.tsv"))
-new_microb <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", release_tag, "/ancientmetagenome-hostassociated/ancientmetagenome-hostassociated.tsv"))
-new_single <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", release_tag, "/ancientsinglegenome-hostassociated/ancientsinglegenome-hostassociated.tsv"))
+new_env <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", release_tag, "/ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples.tsv"))
+new_microb <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", release_tag, "/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv"))
+new_single <- read_tsv(paste0("https://github.com/SPAAM-community/AncientMetagenomeDir/raw/", release_tag, "/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv"))
 new_pubs <- c(new_env$publication_doi, new_microb$publication_doi, new_single$publication_doi) %>% unique() %>% length
 
 adds_pubs <- new_pubs - previous_pubs
@@ -24,6 +24,8 @@ tot_env <- nrow(new_env)
 tot_microb <- nrow(new_microb)
 tot_single <- nrow(new_single)
 
+## TODO TO EXTEND TO INCLUDE LIBRARY
+
 paste0("Release ", new_release, 
        " includes ", adds_pubs, " new publications, representing ", 
        adds_microb, " new ancient host-associated metagenome samples, ",