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22 Open 101 Closed
22 Open 101 Closed
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Issues list

Option to report wall time used to compute each locus enhancement New feature or request low priority
#185 opened Dec 9, 2024 by timothymillar
Consider replacing ADMF with AF in find-snvs output vcf format
#183 opened May 14, 2024 by timothymillar
Sparse representation of genotype posterior enhancement New feature or request
#182 opened Apr 9, 2024 by timothymillar
@timothymillar
1
Allow setting of precision for floats in VCF enhancement New feature or request
#171 opened Feb 28, 2024 by timothymillar
@timothymillar
Allow masking of SNV reference alleles enhancement New feature or request low priority
#165 opened Jul 10, 2023 by timothymillar
@timothymillar
Table with likelihood of membership of a read in an allele enhancement New feature or request
#160 opened Mar 8, 2023 by rfinkers
1
Option to drop uncalled haplotypes enhancement New feature or request
#155 opened Feb 23, 2023 by timothymillar
@timothymillar
1
Consider defaulting flat prior across genotypes enhancement New feature or request low priority question Further information is requested
#139 opened Jun 30, 2022 by timothymillar
@timothymillar
Posterior mean dosage 'DS' enhancement New feature or request vcf format
#136 opened Apr 7, 2022 by timothymillar
@timothymillar
Temperature gradiaent for parallel-temporing enhancement New feature or request low priority
#126 opened Mar 13, 2022 by timothymillar Publication
@timothymillar
Documentation documentation
#121 opened Feb 24, 2022 by timothymillar
3 of 6 tasks
Publication
@timothymillar
4
Option to use previous call as initial genotype when re-calling enhancement New feature or request low priority
#116 opened Jul 15, 2021 by timothymillar
@timothymillar
Unifiy posterior mode methods code quality low priority
#114 opened Jul 15, 2021 by timothymillar
@timothymillar
Unify exact calling methods code quality low priority
#111 opened Jul 15, 2021 by timothymillar
@timothymillar
Generalise default and per sample specification of parameters enhancement New feature or request low priority
#107 opened Jun 28, 2021 by timothymillar
@timothymillar
Add CIGAR string for variants. enhancement New feature or request low priority vcf format
#105 opened Jun 24, 2021 by timothymillar
@timothymillar
Consider option to calculate log-likelihoods ignoring dosage for VCF output low priority vcf format
#97 opened May 11, 2021 by timothymillar
@timothymillar
Record unknown/novel alleles enhancement New feature or request low priority vcf format
#89 opened Feb 16, 2021 by timothymillar
@timothymillar
1
Check and improve code coverage code quality
#81 opened Feb 11, 2021 by timothymillar Publication
@timothymillar
Identify haplo-tagging SNPs enhancement New feature or request low priority
#73 opened Jan 12, 2021 by timothymillar
@timothymillar
Investigate supporting fixed-length MNP variants enhancement New feature or request low priority
#51 opened Sep 21, 2020 by timothymillar
@timothymillar
1
Make merging overlapping SNPs optional bug Something isn't working low priority
#50 opened Sep 21, 2020 by timothymillar
ProTip! What’s not been updated in a month: updated:<2024-11-22.