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@PennChopMicrobiomeProgram

PennChopMicrobiomeProgram

Bioinformatics software for microbiome science

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  1. adonisplus adonisplus Public

    R 2 2

  2. mirix mirix Public

    Quantify the susceptibility of a bacterial community to an antibiotic.

    R 2 1

  3. dnabc dnabc Public

    Identify DNA barcodes in high-throughput sequencing data files

    Python 6

  4. unassigner unassigner Public

    Type strain identification for 16S reads

    Python 5 4

Repositories

Showing 10 of 27 repositories
  • dnabc Public

    Identify DNA barcodes in high-throughput sequencing data files

    PennChopMicrobiomeProgram/dnabc’s past year of commit activity
    Python 0 GPL-2.0 6 0 1 Updated Nov 18, 2024
  • CHOP_metadata_checker Public
    PennChopMicrobiomeProgram/CHOP_metadata_checker’s past year of commit activity
    HTML 0 3 12 0 Updated Nov 18, 2024
  • unassigner Public

    Type strain identification for 16S reads

    PennChopMicrobiomeProgram/unassigner’s past year of commit activity
    Python 5 4 10 1 Updated Nov 14, 2024
  • PCMP_ITS_pipeline Public
    PennChopMicrobiomeProgram/PCMP_ITS_pipeline’s past year of commit activity
    R 0 1 0 0 Updated Nov 6, 2024
  • adonisplus Public
    PennChopMicrobiomeProgram/adonisplus’s past year of commit activity
    R 2 GPL-3.0 2 0 2 Updated Nov 5, 2024
  • PennChopMicrobiomeProgram.github.io Public

    Dev board for PCMP

    PennChopMicrobiomeProgram/PennChopMicrobiomeProgram.github.io’s past year of commit activity
    SCSS 0 0 0 0 Updated Oct 23, 2024
  • SampleRegistry Public

    Web application to keep track of samples sequenced

    PennChopMicrobiomeProgram/SampleRegistry’s past year of commit activity
    Python 0 3 7 0 Updated Oct 15, 2024
  • mirix Public

    Quantify the susceptibility of a bacterial community to an antibiotic.

    PennChopMicrobiomeProgram/mirix’s past year of commit activity
    R 2 1 1 1 Updated Jul 18, 2024
  • whatbacteria Public

    Database of bacterial phenotypes and antibiotic susceptibility

    PennChopMicrobiomeProgram/whatbacteria’s past year of commit activity
    R 0 0 0 0 Updated Jun 26, 2024
  • wfrcwf Public
    PennChopMicrobiomeProgram/wfrcwf’s past year of commit activity
    Python 0 0 0 0 Updated Jun 18, 2024
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