Skip to content

Commit

Permalink
Update examples.md (#59)
Browse files Browse the repository at this point in the history
updated example data URL
  • Loading branch information
Magdoll authored Jun 26, 2024
1 parent 3d68ec2 commit c09375c
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions docs/umi/examples.md
Original file line number Diff line number Diff line change
Expand Up @@ -10,14 +10,14 @@ nav_order: 4
This is an example of an end-to-end cmd-line-only workflow:

# Download HiFi reads
$ wget https://downloads.pacbcloud.com/public/dataset/IsoSeq_sandbox/2022_pbmc_singlecell_mini/ccs.bam
$ wget https://downloads.pacbcloud.com/public/dataset/IsoSeq_sandbox/2022_pbmc_singlecell_mini/ccs.bam.pbi
$ wget https://downloads.pacbcloud.com/public/dataset/Kinnex-single-cell-RNA/TUTORIAL-DATA-PBMC-single-cell-mini/ccs.bam
$ wget https://downloads.pacbcloud.com/public/dataset/Kinnex-single-cell-RNA/TUTORIAL-DATA-PBMC-single-cell-mini/ccs.bam.pbi

# Download cDNA primers
$ wget https://downloads.pacbcloud.com/public/dataset/IsoSeq_sandbox/2022_pbmc_singlecell_mini/primers.fasta
$ wget https://downloads.pacbcloud.com/public/dataset/Kinnex-single-cell-RNA/TUTORIAL-DATA-PBMC-single-cell-mini/primers.fasta

# Download cell barcode include list
$ wget https://downloads.pacbcloud.com/public/dataset/IsoSeq_sandbox/10x_barcodes/3M-february-2018-REVERSE-COMPLEMENTED.txt.gz
$ wget https://downloads.pacbcloud.com/public/dataset/Kinnex-single-cell-RNA/REF-10x_barcodes/3M-february-2018-REVERSE-COMPLEMENTED.txt.gz

# Check lima version to be >= 2.6.0
$ lima --version
Expand Down

0 comments on commit c09375c

Please sign in to comment.