Merge pull request #218 from PNNL-CompBio/dev

renamed actions and broke them down to smaller ones

.github/workflows/metrics-docker-build.yml → .github/workflows/dist-immune-build.yml

@@ -5,10 +5,15 @@ defaults:
 on:
   push:
     paths:
+<<<<<<< HEAD:.github/workflows/dist-immune-build.yml
+      - 'metrics/distance/*'
+      - 'metrics/imm-subtypes/*'
+=======
       - 'metrics/*'
       - 'metrics/*/*'
       - 'simulatedData/*'
       - 'signatureMatrices/*'
+>>>>>>> main:.github/workflows/metrics-docker-build.yml
 
 jobs:
   build-and-push-tools:
@@ -25,27 +30,13 @@ jobs:
         with:
           username: ${{ secrets.DOCKER }}
           password: ${{ secrets.DOCKERHUB_PASSWORD }}
-      - name: Build and push correlations
-        uses: docker/build-push-action@v4
-        with:
-          context: metrics/correlations
-          platforms: linux/amd64,linux/arm64
-          push: true
-          tags: tumordeconv/correlation:latest
       - name: Build and push distance
         uses: docker/build-push-action@v4
         with:
           context: metrics/distance
           platforms: linux/amd64,linux/arm64
           push: true
           tags: tumordeconv/comparison:latest
-      - name: Build and push figures
-        uses: docker/build-push-action@v4
-        with:
-          context: metrics/figures
-          platforms: linux/amd64,linux/arm64
-          push: true
-          tags: tumordeconv/figures:latest
       - name: Build and push immune subtype
         uses: docker/build-push-action@v4
         with:

.github/workflows/fig-cor-build.yml

@@ -0,0 +1,40 @@
+name: Docker-build-metrics
+defaults:
+  run:
+    working-directory: ./
+on:
+  push:
+    paths:
+      - 'metrics/figures/*'
+      - 'metrics/correlation/*'
+
+jobs:
+  build-and-push-tools:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v2
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v2
+      - name: Login to DockerHub
+        uses: docker/login-action@v2
+        with:
+          username: ${{ secrets.DOCKER }}
+          password: ${{ secrets.DOCKERHUB_PASSWORD }}
+      - name: Build and push correlations
+        uses: docker/build-push-action@v4
+        with:
+          context: metrics/correlations
+          platforms: linux/amd64,linux/arm64
+          push: true
+          tags: tumordeconv/correlation:latest
+      - name: Build and push figures
+        uses: docker/build-push-action@v4
+        with:
+          context: metrics/figures
+          platforms: linux/amd64,linux/arm64
+          push: true
+          tags: tumordeconv/figures:latest
+

signature_matrices/Matrisome.txt

@@ -1,4 +1,4 @@
-ECM Glycoproteins	Collagens	Proteoglycans	ECM-affiliated Proteins	ECM Regulators	Secreted Factors
+NAME	ECM Glycoproteins	Collagens	Proteoglycans	ECM-affiliated Proteins	ECM Regulators	Secreted Factors
 ABI3BP	1	0	0	0	0	0
 ADIPOQ	1	0	0	0	0	0
 AEBP1	1	0	0	0	0	0