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Wageningen UR Plant Breeding

Wageningen UR Plant Breeding

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  1. pedigreeSim pedigreeSim Public

    PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can s…

    Java 13 2

  2. QTM QTM Public

    QTLTableMiner++ tool for mining tables in scientific articles

    Java 4 6

  3. Pedimap Pedimap Public

    Pedimap: software for the visualization of genetic and phenotypic data in pedigrees

    C++ 4 1

  4. MySQLdbCompare MySQLdbCompare Public

    Compare copies of MySQL db schemas

    3

  5. chebi2gene chebi2gene Public

    Python 3

  6. jChebi2gene jChebi2gene Public

    Java library to automatically link a chebi compound/identifier to a metabolic pathway or genes from the tomato genome.

    Java 3

Repositories

Showing 10 of 31 repositories
  • elixir-fondue-datathon Public

    ELIXIR FONDUE Datathon

    PBR/elixir-fondue-datathon’s past year of commit activity
    Jupyter Notebook 2 0 1 0 Updated Dec 5, 2024
  • fitPoly Public

    Development repository of the R package fitPoly.

    PBR/fitPoly’s past year of commit activity
    R 1 1 0 0 Updated Aug 15, 2024
  • FAIR_CxE Public

    Supporting information for the Manuscript: TITLE

    PBR/FAIR_CxE’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated May 5, 2023
  • coreCollection Public

    coreCollection

    PBR/coreCollection’s past year of commit activity
    R 0 0 0 0 Updated Dec 20, 2022
  • QTM Public

    QTLTableMiner++ tool for mining tables in scientific articles

    PBR/QTM’s past year of commit activity
    Java 4 Apache-2.0 6 2 3 Updated May 20, 2022
  • CoSSA Public

    Comparative Subsequence Sets Analysis (CoSSA) workflows to identify haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data

    PBR/CoSSA’s past year of commit activity
    Shell 0 2 0 0 Updated Jan 13, 2022
  • pedigreeSim Public

    PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can simulate meioses with or without chiasma interference, and in tetraploids it can simulate meioses with two bivalents or one quadrivalent per set of hom…

    PBR/pedigreeSim’s past year of commit activity
    Java 13 2 2 0 Updated Apr 13, 2021
  • Pedimap Public

    Pedimap: software for the visualization of genetic and phenotypic data in pedigrees

    PBR/Pedimap’s past year of commit activity
    C++ 4 1 0 0 Updated Feb 4, 2021
  • PediHaplotyper Public

    PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees

    PBR/PediHaplotyper’s past year of commit activity
    R 2 1 0 0 Updated Feb 2, 2021
  • WatsonPotato Public

    Additional material for the article: Extracting knowledge networks from plant scientific literature: Potato tuber flesh color as an exemplary trait.

    PBR/WatsonPotato’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Sep 16, 2020
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