Merge pull request #35 from Openscapes/wrap-updates

add awesome image to home page, final resources links and cleanup
Openscapes · Mar 10, 2024 · e9f4686 · e9f4686
2 parents ef80daf + 0e56ba6
commit e9f4686
Show file tree

Hide file tree

Showing 7 changed files with 29 additions and 98 deletions.
diff --git a/2024.qmd b/2024.qmd
@@ -2,9 +2,9 @@
 title: "Resources 2024"
 ---
 
-*Pathways to Open Science 2024 starts January 25th. This page will link to the content from each Community Call (e.g. agenda, video, slides) as well as resources shared by speakers and participants. We will add resources here that come up in each session.*
+*Pathways to Open Science 2024 ran January 25 to February 29. This page links to the content from each Community Call (e.g. agenda, video, slides) and the Agenda doc includes many linked resources shared by speakers and participants.*
 
-*Certificates will be available with the number of hours you completed in the program.*
+*Certificates were granted for anyone who participated in one or more of the six sessions.*
 
 Quicklink: [OpenscapesCommunityCalls \[ 2024-pathways \]](https://drive.google.com/drive/folders/1H4krhccewqitgE39g7VAPFQKf0aaUu82?usp=drive_link) Google Drive folder
 
@@ -31,6 +31,7 @@ Speakers
 
 -   [Aneese Williams, MSc](https://www.linkedin.com/in/aneese-williams-mps-80a846b6/), Environmental Management Systems (EMS) Coordinator, City of West Palm Beach
     -   My journey to open science ([slides](https://docs.google.com/presentation/d/1FFCBGvOmr1FpCaKK7JU0C5rpdv2oQ7_Q/))
+    -   Open Science Key Terms ([slides](https://docs.google.com/presentation/d/16RbJ3S4njI22tBjrsjxzbl3Yjv1OVNKE/))
 -   [LaTreese Denson, PhD](https://www.bweems.org/member-directory/latreese-s-denson-ph-d), Stock Assessment Analyst, NOAA Southeast Fisheries Science Center
 -   [Antoinette Foster, PhD](https://www.ohsu.edu/racial-equity-and-inclusion-center/our-people), Director of Community Transformation, OHSU
 
@@ -53,40 +54,6 @@ Speakers
 
 Coworking comes in many flavors. For us, coworking involves doing our own work at the same time together with opportunities to check in, and sometimes screenshare to get feedback or solve a problem. Seeing how other people work is a big part of this transition to working more openly and collaboratively.
 
-We have breakout rooms to meet the speakers, for topic-based screenshares and discussions, and for socializing or quiet working. Follow the links to our collaborative notes doc to see the resources everyone shared on R and tidy data, Python, math, GIS, data visualization, Quarto, GitHub, ocean biodiversity data, NASA TOPS Open Science 101 Modules, training and paid internships, Data that’s FAIR (Findable, Accessible, Interoperable, Reusable) and open, storymaps, replicability and reproducibility.
+We have breakout rooms to meet the speakers, for topic-based screenshares and discussions, and for socializing or quiet working. **Follow the links below to our collaborative notes doc to see the resources that speakers and participants shared** on R and tidy data, Python, math, GIS, ArcGIS, Storymaps, data visualization, Quarto, GitHub, ocean biodiversity data, creating an ORCID profile, NASA TOPS Open Science 101 Modules, training and paid internships, Data that’s FAIR (Findable, Accessible, Interoperable, Reusable) and open, replicability and reproducibility.
 
-[February 1](https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.k5xex36bbt1k) \| [February 15](https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.8jo8fpfqrb5p) \| February 29
-
-## Resources recommended by Speakers
-
-Aliyah Griffith
-
--   [The Big Book of R](https://www.bigbookofr.com/)
--   [PSU R Statistical Software Tutorial](https://online.stat.psu.edu/statprogram/tutorials/statistical-software/r)
--   [Google Colab](https://colab.google/) and [example](https://colab.research.google.com/github/microsoft/torchgeo/blob/releases/v0.4/docs/tutorials/trainers.ipynb#scrollTo=b13c2251)
-
-Bárbara Pinheiro
-
--   Ocean Biodiversity Information System - a global open-access data and information clearing-house on marine biodiversity for science, conservation and sustainable development
-    -   <https://mapper.obis.org/>
-    -   <https://github.com/iobis>
-    -   <https://github.com/iobis/robis>
-
-Ileana Fenwick
-
--   [Tidy data Illustrated Series](https://www.openscapes.org/blog/2020/10/12/tidy-data/)
--   Good resource for [how to start a project in R](https://njsilbiger.github.io/GettingStarted/)
--   [BioTIME](https://biotime.st-andrews.ac.uk/)
-
-Call 1 participants recommend
-
--   R
-    -   I use this posit package to data wrangle <https://dplyr.tidyverse.org/>
-    -   [Janitor R package](https://sfirke.github.io/janitor/) for cleaning data in R
-    -   The Carpentries [Intro to R](https://datacarpentry.org/R-genomics/01-intro-to-R.html)
--   Datasets from NOAA, USGS, etc. to practice data mining and visualization:
-    -   This ["tidy coral" lesson](https://nceas.github.io/crescynt-training/tidy_coral) helped walk through NOAA buoy data in R
-    -   The [USGS Vizlab](https://labs.waterdata.usgs.gov/visualizations/) links back to the source data and reusable code
--   GIS
-    -   [Tutorials](https://learn.arcgis.com/en/projects/predict-seagrass-habitats-with-machine-learning/) from learn.arcgis.com
-    -   [NOAA has also published some surveys](https://experience.arcgis.com/experience/dfe13b44993b4449bf47422db9d0e1a6/) that may be good practice from a more social science (socioeconomic) perspective
+[Coworking 1, Feb 1](https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.djx1rcamjz6w) \| [Coworking 2, Feb 15](https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.grka8yrfbfff) \| [Coworking 3, Feb 29](https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.kp0f4kfvvusk)
diff --git a/docs/2024.html b/docs/2024.html
@@ -135,7 +135,6 @@ <h2 id="toc-title">On this page</h2>
   <li><a href="#call-3-february-22-data-science-is-for-us" id="toc-call-3-february-22-data-science-is-for-us" class="nav-link" data-scroll-target="#call-3-february-22-data-science-is-for-us">Call 3, February 22: Data Science is for US</a></li>
   </ul></li>
   <li><a href="#coworking-sessions" id="toc-coworking-sessions" class="nav-link" data-scroll-target="#coworking-sessions">Coworking Sessions</a></li>
-  <li><a href="#resources-recommended-by-speakers" id="toc-resources-recommended-by-speakers" class="nav-link" data-scroll-target="#resources-recommended-by-speakers">Resources recommended by Speakers</a></li>
   </ul>
 </nav>
     </div>
@@ -159,8 +158,8 @@ <h1 class="title">Resources 2024</h1>
 
 </header>
 
-<p><em>Pathways to Open Science 2024 starts January 25th. This page will link to the content from each Community Call (e.g.&nbsp;agenda, video, slides) as well as resources shared by speakers and participants. We will add resources here that come up in each session.</em></p>
-<p><em>Certificates will be available with the number of hours you completed in the program.</em></p>
+<p><em>Pathways to Open Science 2024 ran January 25 to February 29. This page links to the content from each Community Call (e.g.&nbsp;agenda, video, slides) and the Agenda doc includes many linked resources shared by speakers and participants.</em></p>
+<p><em>Certificates were granted for anyone who participated in one or more of the six sessions.</em></p>
 <p>Quicklink: <a href="https://drive.google.com/drive/folders/1H4krhccewqitgE39g7VAPFQKf0aaUu82?usp=drive_link">OpenscapesCommunityCalls [ 2024-pathways ]</a> Google Drive folder</p>
 <section id="community-calls" class="level2">
 <h2 class="anchored" data-anchor-id="community-calls">Community Calls</h2>
@@ -186,6 +185,7 @@ <h3 class="anchored" data-anchor-id="call-2-february-8-building-our-skills-for-a
 <li><a href="https://www.linkedin.com/in/aneese-williams-mps-80a846b6/">Aneese Williams, MSc</a>, Environmental Management Systems (EMS) Coordinator, City of West Palm Beach
 <ul>
 <li>My journey to open science (<a href="https://docs.google.com/presentation/d/1FFCBGvOmr1FpCaKK7JU0C5rpdv2oQ7_Q/">slides</a>)</li>
+<li>Open Science Key Terms (<a href="https://docs.google.com/presentation/d/16RbJ3S4njI22tBjrsjxzbl3Yjv1OVNKE/">slides</a>)</li>
 </ul></li>
 <li><a href="https://www.bweems.org/member-directory/latreese-s-denson-ph-d">LaTreese Denson, PhD</a>, Stock Assessment Analyst, NOAA Southeast Fisheries Science Center</li>
 <li><a href="https://www.ohsu.edu/racial-equity-and-inclusion-center/our-people">Antoinette Foster, PhD</a>, Director of Community Transformation, OHSU</li>
@@ -213,51 +213,8 @@ <h3 class="anchored" data-anchor-id="call-3-february-22-data-science-is-for-us">
 <section id="coworking-sessions" class="level2">
 <h2 class="anchored" data-anchor-id="coworking-sessions">Coworking Sessions</h2>
 <p>Coworking comes in many flavors. For us, coworking involves doing our own work at the same time together with opportunities to check in, and sometimes screenshare to get feedback or solve a problem. Seeing how other people work is a big part of this transition to working more openly and collaboratively.</p>
-<p>We have breakout rooms to meet the speakers, for topic-based screenshares and discussions, and for socializing or quiet working. Follow the links to our collaborative notes doc to see the resources everyone shared on R and tidy data, Python, math, GIS, data visualization, Quarto, GitHub, ocean biodiversity data, NASA TOPS Open Science 101 Modules, training and paid internships, Data that’s FAIR (Findable, Accessible, Interoperable, Reusable) and open, storymaps, replicability and reproducibility.</p>
-<p><a href="https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.k5xex36bbt1k">February 1</a> | <a href="https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.8jo8fpfqrb5p">February 15</a> | February 29</p>
-</section>
-<section id="resources-recommended-by-speakers" class="level2">
-<h2 class="anchored" data-anchor-id="resources-recommended-by-speakers">Resources recommended by Speakers</h2>
-<p>Aliyah Griffith</p>
-<ul>
-<li><a href="https://www.bigbookofr.com/">The Big Book of R</a></li>
-<li><a href="https://online.stat.psu.edu/statprogram/tutorials/statistical-software/r">PSU R Statistical Software Tutorial</a></li>
-<li><a href="https://colab.google/">Google Colab</a> and <a href="https://colab.research.google.com/github/microsoft/torchgeo/blob/releases/v0.4/docs/tutorials/trainers.ipynb#scrollTo=b13c2251">example</a></li>
-</ul>
-<p>Bárbara Pinheiro</p>
-<ul>
-<li>Ocean Biodiversity Information System - a global open-access data and information clearing-house on marine biodiversity for science, conservation and sustainable development
-<ul>
-<li><a href="https://mapper.obis.org/" class="uri">https://mapper.obis.org/</a></li>
-<li><a href="https://github.com/iobis" class="uri">https://github.com/iobis</a></li>
-<li><a href="https://github.com/iobis/robis" class="uri">https://github.com/iobis/robis</a></li>
-</ul></li>
-</ul>
-<p>Ileana Fenwick</p>
-<ul>
-<li><a href="https://www.openscapes.org/blog/2020/10/12/tidy-data/">Tidy data Illustrated Series</a></li>
-<li>Good resource for <a href="https://njsilbiger.github.io/GettingStarted/">how to start a project in R</a></li>
-<li><a href="https://biotime.st-andrews.ac.uk/">BioTIME</a></li>
-</ul>
-<p>Call 1 participants recommend</p>
-<ul>
-<li>R
-<ul>
-<li>I use this posit package to data wrangle <a href="https://dplyr.tidyverse.org/" class="uri">https://dplyr.tidyverse.org/</a></li>
-<li><a href="https://sfirke.github.io/janitor/">Janitor R package</a> for cleaning data in R</li>
-<li>The Carpentries <a href="https://datacarpentry.org/R-genomics/01-intro-to-R.html">Intro to R</a></li>
-</ul></li>
-<li>Datasets from NOAA, USGS, etc. to practice data mining and visualization:
-<ul>
-<li>This <a href="https://nceas.github.io/crescynt-training/tidy_coral">“tidy coral” lesson</a> helped walk through NOAA buoy data in R</li>
-<li>The <a href="https://labs.waterdata.usgs.gov/visualizations/">USGS Vizlab</a> links back to the source data and reusable code</li>
-</ul></li>
-<li>GIS
-<ul>
-<li><a href="https://learn.arcgis.com/en/projects/predict-seagrass-habitats-with-machine-learning/">Tutorials</a> from learn.arcgis.com</li>
-<li><a href="https://experience.arcgis.com/experience/dfe13b44993b4449bf47422db9d0e1a6/">NOAA has also published some surveys</a> that may be good practice from a more social science (socioeconomic) perspective</li>
-</ul></li>
-</ul>
+<p>We have breakout rooms to meet the speakers, for topic-based screenshares and discussions, and for socializing or quiet working. <strong>Follow the links below to our collaborative notes doc to see the resources that speakers and participants shared</strong> on R and tidy data, Python, math, GIS, ArcGIS, Storymaps, data visualization, Quarto, GitHub, ocean biodiversity data, creating an ORCID profile, NASA TOPS Open Science 101 Modules, training and paid internships, Data that’s FAIR (Findable, Accessible, Interoperable, Reusable) and open, replicability and reproducibility.</p>
+<p><a href="https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.djx1rcamjz6w">Coworking 1, Feb 1</a> | <a href="https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.grka8yrfbfff">Coworking 2, Feb 15</a> | <a href="https://docs.google.com/document/d/1rRq6UweAtBzAD1ZiemnghrvolOkqTAdNJLiDm4woa8U/edit#heading=h.kp0f4kfvvusk">Coworking 3, Feb 29</a></p>
 
 
 </section>

diff --git a/docs/images/pathways-recap-zoomie-wordcloud.png b/docs/images/pathways-recap-zoomie-wordcloud.png
diff --git a/docs/index.html b/docs/index.html
@@ -165,10 +165,12 @@ <h1 class="title">Pathways to Open Science</h1>
 
 <section id="welcome" class="level2">
 <h2 class="anchored" data-anchor-id="welcome"><strong>Welcome</strong></h2>
-<p><strong>Pathways to Open Science</strong> is a remote event series for Black environmental &amp; marine researchers to build community for the future of data intensive science. This is an ongoing collaboration with Black in Marine Science (<a href="https://www.blackinmarinescience.org/">BIMS</a>), Black Women in Ecology, Evolution, and Marine Science (<a href="https://www.bweems.org/">BWEEMS</a>), HBCU marine science professors, and now <a href="https://prereview.org/">PREreview</a> and Antoinette Foster, PhD. The program is led by Ileana Fenwick, with Alex Davis, PhD, and Aneese Williams. The series will began on <strong>January 25, 2024</strong>!</p>
-<center>
-<img src="images/logos-openscapes-bweems-bims-prereview.png" class="img-fluid" style="width:80.0%">
-</center>
+<p><strong>Pathways to Open Science</strong> is a remote event series for Black environmental &amp; marine researchers to build community for the future of data intensive science. This is an ongoing collaboration with Black in Marine Science (<a href="https://www.blackinmarinescience.org/">BIMS</a>), Black Women in Ecology, Evolution, and Marine Science (<a href="https://www.bweems.org/">BWEEMS</a>), HBCU marine science professors, and now <a href="https://prereview.org/">PREreview</a> and Antoinette Foster, PhD. The program is led by Ileana Fenwick, with Alex Davis, PhD, and Aneese Williams. The 2024 series ran from <strong>January 25 to February 29.</strong></p>
+<div class="quarto-figure quarto-figure-center">
+<figure class="figure">
+<p><img src="images/pathways-recap-zoomie-wordcloud.png" class="img-fluid figure-img" style="width:85.0%" alt="2 zoom selfies of 48 Black people smiling and waving, a cartoon of a Black woman sitting, smiling, reading a book called Open Science, and a word cloud with community, personal stories, resources, as largest font words"></p>
+</figure>
+</div>
 </section>
 <section id="program-details" class="level2">
 <h2 class="anchored" data-anchor-id="program-details"><strong>Program Details</strong></h2>
@@ -261,6 +263,9 @@ <h2 class="anchored" data-anchor-id="citation">Citation</h2>
 <p>Ileana Fenwick &amp; Julia Stewart Lowndes. (2023). Pathways to Open Science (2023.02). Zenodo. https://doi.org/10.5281/zenodo.7662700</p>
 </blockquote>
 <p>Please visit the Pathways <a href="https://doi.org/10.5281/zenodo.7662699">DOI link</a> to get the most recent version - the one above is not automatically generated and may be out of date if we release an updated version.</p>
+<center>
+<img src="images/logos-openscapes-bweems-bims-prereview.png" class="img-fluid" style="width:80.0%">
+</center>
 
 
 </section>