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Updating link to tests badge #35

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Jan 16, 2024
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Updating link to tests badge #35

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7 changes: 3 additions & 4 deletions README.md
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Expand Up @@ -4,7 +4,7 @@

**_An awesome demultiplexing and quality control pipeline_**

[![tests](https://github.com/OpenOmics/weave/workflows/tests/badge.svg)](https://github.com/OpenOmics/weave/actions/workflows/main.yaml) [![docs](https://github.com/OpenOmics/weave/actions/workflows/doc.yml/badge.svg)](https://github.com/OpenOmics/weave/actions/workflows/docs.yml) [![GitHub issues](https://img.shields.io/github/issues/OpenOmics/weave?color=brightgreen)](https://github.com/OpenOmics/weave/issues) [![GitHub license](https://img.shields.io/github/license/OpenOmics/weave)](https://github.com/OpenOmics/weave/blob/main/LICENSE)
[![tests](https://github.com/OpenOmics/weave/workflows/tests/badge.svg)](https://github.com/OpenOmics/weave/actions/workflows/dryrun.yaml) [![docs](https://github.com/OpenOmics/weave/actions/workflows/doc.yml/badge.svg)](https://github.com/OpenOmics/weave/actions/workflows/docs.yml) [![GitHub issues](https://img.shields.io/github/issues/OpenOmics/weave?color=brightgreen)](https://github.com/OpenOmics/weave/issues) [![GitHub license](https://img.shields.io/github/license/OpenOmics/weave)](https://github.com/OpenOmics/weave/blob/main/LICENSE)

<i>
This is the home of the pipeline, weave. Its long-term goals: to provide accurate quantification, taxonomic classification, and functional profiling of assembled (bacteria and archaea) metagenomes!
Expand All @@ -18,8 +18,7 @@ The **`./weave`** pipeline is composed of two sub commands to setup and run the

> [weave **run**](https://openomics.github.io/weave/usage/run/)
> Run the weave pipeline with your input files.


>
> [weave **cache**](https://openomics.github.io/weave/usage/cache/)
> Downloads the reference files for the pipeline to a selected directory.

Expand Down Expand Up @@ -67,4 +66,4 @@ This site is a living document, created for and by members like you. weave is ma
<sup>**4.** [Menzel P., Ng K.L., Krogh A. (2016) Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nat. Commun. 7:11257](http://www.nature.com/ncomms/2016/160413/ncomms11257/full/ncomms11257.html)</sup>
<sup>**5.** [Wingett SW and Andrews S. FastQ Screen: A tool for multi-genome mapping and quality control [version 2; referees: 4 approved]. F1000Research 2018, 7:1338](https://doi.org/10.12688/f1000research.15931.2)</sup>
<sup>**6.** [Shifu Chen, Yanqing Zhou, Yaru Chen, Jia Gu; fastp: an ultra-fast all-in-one FASTQ preprocessor, Bioinformatics, Volume 34, Issue 17, 1 September 2018, Pages i884–i890.](https://doi.org/10.1093/bioinformatics/bty560)</sup>
<sup>**7.** [Wood, D.E., Lu, J. & Langmead, B. Improved metagenomic analysis with Kraken 2. Genome Biol 20, 257 (2019).](https://doi.org/10.1186/s13059-019-1891-0)</sup>
<sup>**7.** [Wood, D.E., Lu, J. & Langmead, B. Improved metagenomic analysis with Kraken 2. Genome Biol 20, 257 (2019).](https://doi.org/10.1186/s13059-019-1891-0)</sup>
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