fix: remove -r from snakemake

OpenOmics · Feb 8, 2024 · fae01fb · fae01fb
1 parent dce0ff9
commit fae01fb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/utils.py b/scripts/utils.py
@@ -266,7 +266,7 @@ def exec_pipeline(configs, dry_run=False, local=False):
         top_env['SNK_CONFIG'] = str(config_file.absolute())
         top_env['SINGULARITY_CACHEDIR'] = str(Path(this_config['out_to'], '.singularity').absolute())
         this_cmd = [
-            "snakemake", "-p", "-r",
+            "snakemake", "-p",
             "--use-singularity",
             "--rerun-incomplete",
             "--keep-incomplete",