feat: add short read aligners to docker

docker/NGS_QC/Dockerfile

@@ -3,7 +3,7 @@ ENV TZ=America/New_York
 ENV DEBIAN_FRONTEND=noninteractive
 RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
 RUN apt-get update; apt-get upgrade -y bash && \
-    apt-get install -y fastqc python-is-python3 python3-pip samtools multiqc fastp kraken2 bowtie2 libgd-graph-perl git curl libz-dev build-essential
+    apt-get install -y fastqc python-is-python3 rna-star bwa hisat2 python3-pip samtools multiqc fastp kraken2 bowtie2 libgd-graph-perl git curl libz-dev build-essential
 RUN mkdir /opt2; curl -S -s -L https://github.com/StevenWingett/FastQ-Screen/archive/refs/tags/v0.15.3.tar.gz --output /opt2/v0.15.3.tar.gz
 RUN cd /opt2 && tar xvf v0.15.3.tar.gz 
 RUN cd /opt2 && git clone https://github.com/bioinformatics-centre/kaiju.git