Update index.rst

Novartis · May 23, 2024 · 8d80405 · 8d80405
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commit 8d80405
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/docs/tutorials/index.rst b/docs/tutorials/index.rst
@@ -31,7 +31,7 @@ We can use the output of cellranger count *filtered_feature_bc_matrix.h5* as the
 ``feature_type``, a string, either 'mRNA' or 'sgRNA' or 'ADT' or 'tag' or 'CMO' or 'ATAC'.
 
 .. note::
-	The ambient profile is calculated by averaging the cell pool under this mode. If you want to use a more accurate ambient profile, please consider calculating it and using ``.pickle`` files as the input, as detailed below.
+   The ambient profile is calculated by averaging the cell pool under this mode. If you want to use a more accurate ambient profile, please consider calculating it and using ``.pickle`` files as the input, as detailed below.
 
 The output folder contains an h5ad file::
    
@@ -72,8 +72,8 @@ We can also run ``scar`` by::
 
 ``feature_type``, a string, either 'mRNA' or 'sgRNA' or 'ADT' or 'tag' or 'CMO' or 'ATAC'.
 
- .. note::
-      An extra argument ``ambient_profile`` is recommended to achieve deeper noise reduction.
+.. note::
+     An extra argument ``ambient_profile`` is recommended to achieve deeper noise reduction.
 
 
 ``ambient_profile`` represents the probability of occurrence of each ambient transcript and can be empirically estimated by averging cell-free droplets.