corrected paths + minor embellishments #101
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corrected paths (new organization)
karinlag
reviewed
Jan 21, 2019
| @@ -11,7 +11,7 @@ Dataset used during this session can be found in the following location within a | |||
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We should probably move the test data to /projects too. Also, maybe remove the Dec14 tag? That would make it more independent.
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ok - we can remove tag, then we have to rename the files on Abel. - has to be consistent. Can rename when done.
So: pending
karinlag
reviewed
Jan 21, 2019
| @@ -100,7 +100,7 @@ scp -r <your_user_name>@abel.uio.no:/work/projects/nn9305k/home/<your_user_name> | |||
| ## Trimmomatic - adapter trimming and removing | |||
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| We wll use [Trimmomatic](http://www.usadellab.org/cms/index.php?page=trimmomatic) to trim/remove adapter and low quality reads. | |||
| This tool is NOT available via _module load_ in abel but available at _/work/projects/nn9305k/bin/_. Make sure you know where the adapter sequences are available. | |||
| This tool is NOT available via _module load_ in abel but available at _`/work/projects/nn9305k/bin/`_. Make sure you know where the adapter sequences are available. | |||
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We have gone over to use conda. Could you check if trimmomatic is conda available, and if so, update the text?
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Looks mostly good, just a few suggestions that relate to the bigger picture 🙂 |
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corrected paths (new organization)