aux for signa #37
aux for signa #37
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Codecov Report
@@ Coverage Diff @@
## devel #37 +/- ##
==========================================
- Coverage 14.50% 13.18% -1.33%
==========================================
Files 16 19 +3
Lines 2965 3209 +244
==========================================
- Hits 430 423 -7
- Misses 2535 2786 +251
... and 1 file with indirect coverage changes Help us with your feedback. Take ten seconds to tell us how you rate us. Have a feature suggestion? Share it here. |
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flake8
niftypet/nipet/aux_sig.py|72 col 38| E201 whitespace after '('
niftypet/nipet/aux_sig.py|72 col 69| E202 whitespace before ')'
niftypet/nipet/aux_sig.py|72 col 100| E501 line too long (154 > 99 characters)
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niftypet/nipet/aux_sig.py|75 col 100| E501 line too long (100 > 99 characters)
niftypet/nipet/aux_sig.py|84 col 1| E303 too many blank lines (3)
niftypet/nipet/aux_sig.py|84 col 1| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|86 col 1| E302 expected 2 blank lines, found 3
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niftypet/nipet/aux_sig.py|140 col 1| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|144 col 1| E303 too many blank lines (3)
niftypet/nipet/aux_sig.py|144 col 1| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|146 col 1| E302 expected 2 blank lines, found 3
niftypet/nipet/aux_sig.py|150 col 5| F841 local variable 'NSN1_c' is assigned to but never used
niftypet/nipet/aux_sig.py|153 col 25| E231 missing whitespace after ','
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niftypet/nipet/aux_sig.py|176 col 48| E262 inline comment should start with '# '
niftypet/nipet/aux_sig.py|176 col 100| E501 line too long (101 > 99 characters)
niftypet/nipet/aux_sig.py|177 col 17| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|181 col 25| E231 missing whitespace after ','
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niftypet/nipet/aux_sig.py|194 col 17| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|196 col 21| E221 multiple spaces before operator
niftypet/nipet/aux_sig.py|199 col 25| E201 whitespace after '('
niftypet/nipet/aux_sig.py|199 col 45| E202 whitespace before ')'
niftypet/nipet/aux_sig.py|200 col 31| E222 multiple spaces after operator
niftypet/nipet/aux_sig.py|207 col 24| E231 missing whitespace after ','
niftypet/nipet/aux_sig.py|209 col 19| E231 missing whitespace after ':'
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niftypet/nipet/aux_sig.py|211 col 1| W293 blank line contains whitespace
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niftypet/nipet/aux_sig.py|214 col 1| E303 too many blank lines (3)
niftypet/nipet/aux_sig.py|214 col 1| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|214 col 85| W291 trailing whitespace
niftypet/nipet/aux_sig.py|217 col 1| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|219 col 1| E302 expected 2 blank lines, found 3
niftypet/nipet/aux_sig.py|237 col 40| E228 missing whitespace around modulo operator
niftypet/nipet/aux_sig.py|239 col 23| E231 missing whitespace after ','
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niftypet/nipet/aux_sig.py|249 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|2 col 1| F401 'sys' imported but unused
niftypet/nipet/lm_sig/hst_sig.py|9 col 1| F401 'math.pi' imported but unused
niftypet/nipet/lm_sig/hst_sig.py|15 col 1| E265 block comment should start with '# '
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niftypet/nipet/lm_sig/hst_sig.py|27 col 1| E302 expected 2 blank lines, found 1
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niftypet/nipet/lm_sig/hst_sig.py|33 col 1| E303 too many blank lines (3)
niftypet/nipet/lm_sig/hst_sig.py|35 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|42 col 34| E231 missing whitespace after ','
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niftypet/nipet/lm_sig/hst_sig.py|67 col 100| E501 line too long (116 > 99 characters)
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niftypet/nipet/lm_sig/hst_sig.py|80 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|82 col 9| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|91 col 1| W293 blank line contains whitespace
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niftypet/nipet/lm_sig/hst_sig.py|95 col 9| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|96 col 4| W291 trailing whitespace
niftypet/nipet/lm_sig/hst_sig.py|114 col 13| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|118 col 13| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|120 col 1| W293 blank line contains whitespace
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niftypet/nipet/lm_sig/hst_sig.py|131 col 1| W293 blank line contains whitespace
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niftypet/nipet/lm_sig/hst_sig.py|144 col 100| E501 line too long (124 > 99 characters)
niftypet/nipet/lm_sig/hst_sig.py|144 col 106| E262 inline comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|149 col 9| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|149 col 9| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|150 col 100| E501 line too long (102 > 99 characters)
niftypet/nipet/lm_sig/hst_sig.py|151 col 9| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|152 col 100| E501 line too long (102 > 99 characters)
niftypet/nipet/lm_sig/hst_sig.py|154 col 9| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|157 col 1| W293 blank line contains whitespace
niftypet/nipet/lm_sig/hst_sig.py|159 col 5| E303 too many blank lines (3)
niftypet/nipet/lm_sig/hst_sig.py|166 col 1| W293 blank line contains whitespace
niftypet/nipet/lm_sig/hst_sig.py|170 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|173 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|178 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|197 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|197 col 12| C408 Unnecessary dict call - rewrite as a literal.
niftypet/nipet/lm_sig/hst_sig.py|209 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|211 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|212 col 42| B008 Do not perform function calls in argument defaults. The call is performed only once at function definition time. All calls to your function will reuse the result of that definition-time function call. If this is intended, assign the function call to a module-level variable and use that variable as a default value.
niftypet/nipet/lm_sig/hst_sig.py|212 col 100| E501 line too long (134 > 99 characters)
niftypet/nipet/lm_sig/hst_sig.py|212 col 132| E202 whitespace before ')'
niftypet/nipet/lm_sig/hst_sig.py|218 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|233 col 28| W291 trailing whitespace
niftypet/nipet/lm_sig/hst_sig.py|250 col 5| F841 local variable 'bval' is assigned to but never used
niftypet/nipet/lm_sig/hst_sig.py|256 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|258 col 15| E231 missing whitespace after ':'
niftypet/nipet/lm_sig/hst_sig.py|259 col 14| E203 whitespace before ':'
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niftypet/nipet/lm_sig/hst_sig.py|274 col 1| W293 blank line contains whitespace
niftypet/nipet/lm_sig/hst_sig.py|276 col 5| E303 too many blank lines (3)
niftypet/nipet/lm_sig/hst_sig.py|283 col 64| E227 missing whitespace around bitwise or shift operator
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niftypet/nipet/lm_sig/hst_sig.py|294 col 15| E201 whitespace after '{'
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niftypet/nipet/lm_sig/hst_sig.py|300 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|303 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|304 col 25| E201 whitespace after '('
niftypet/nipet/lm_sig/hst_sig.py|304 col 39| E227 missing whitespace around bitwise or shift operator
niftypet/nipet/lm_sig/hst_sig.py|305 col 26| E231 missing whitespace after ','
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niftypet/nipet/lm_sig/hst_sig.py|306 col 25| E201 whitespace after '('
niftypet/nipet/lm_sig/hst_sig.py|306 col 73| E202 whitespace before ')'
niftypet/nipet/lm_sig/hst_sig.py|307 col 26| E231 missing whitespace after ','
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niftypet/nipet/lm_sig/hst_sig.py|310 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|314 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|315 col 19| E231 missing whitespace after ':'
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niftypet/nipet/lm_sig/hst_sig.py|324 col 1| W391 blank line at end of file
niftypet/nipet/lm_sig/init.py|2 col 1| F401 '.lmproc_sig' imported but unused
niftypet/nipet/lm_sig/init.py|3 col 1| F401 '.hst_sig' imported but unused
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flake8
niftypet/nipet/aux_sig.py|194 col 17| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|196 col 21| E221 multiple spaces before operator
niftypet/nipet/aux_sig.py|199 col 25| E201 whitespace after '('
niftypet/nipet/aux_sig.py|199 col 45| E202 whitespace before ')'
niftypet/nipet/aux_sig.py|200 col 31| E222 multiple spaces after operator
niftypet/nipet/aux_sig.py|207 col 24| E231 missing whitespace after ','
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niftypet/nipet/aux_sig.py|209 col 44| E231 missing whitespace after ':'
niftypet/nipet/aux_sig.py|211 col 1| W293 blank line contains whitespace
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niftypet/nipet/aux_sig.py|214 col 1| E303 too many blank lines (3)
niftypet/nipet/aux_sig.py|214 col 1| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|214 col 85| W291 trailing whitespace
niftypet/nipet/aux_sig.py|217 col 1| E265 block comment should start with '# '
niftypet/nipet/aux_sig.py|219 col 1| E302 expected 2 blank lines, found 3
niftypet/nipet/aux_sig.py|237 col 40| E228 missing whitespace around modulo operator
niftypet/nipet/aux_sig.py|239 col 23| E231 missing whitespace after ','
niftypet/nipet/aux_sig.py|240 col 23| E231 missing whitespace after ','
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niftypet/nipet/aux_sig.py|247 col 30| E231 missing whitespace after ':'
niftypet/nipet/aux_sig.py|249 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|2 col 1| F401 'sys' imported but unused
niftypet/nipet/lm_sig/hst_sig.py|9 col 1| F401 'math.pi' imported but unused
niftypet/nipet/lm_sig/hst_sig.py|15 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|17 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|20 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|27 col 1| E302 expected 2 blank lines, found 1
niftypet/nipet/lm_sig/hst_sig.py|29 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|33 col 1| E303 too many blank lines (3)
niftypet/nipet/lm_sig/hst_sig.py|35 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|42 col 34| E231 missing whitespace after ','
niftypet/nipet/lm_sig/hst_sig.py|63 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|64 col 100| E501 line too long (101 > 99 characters)
niftypet/nipet/lm_sig/hst_sig.py|66 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|67 col 100| E501 line too long (116 > 99 characters)
niftypet/nipet/lm_sig/hst_sig.py|70 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|70 col 5| E265 block comment should start with '# '
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niftypet/nipet/lm_sig/hst_sig.py|91 col 1| W293 blank line contains whitespace
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niftypet/nipet/lm_sig/hst_sig.py|144 col 100| E501 line too long (124 > 99 characters)
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niftypet/nipet/lm_sig/hst_sig.py|149 col 9| E303 too many blank lines (2)
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niftypet/nipet/lm_sig/hst_sig.py|151 col 9| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|152 col 100| E501 line too long (102 > 99 characters)
niftypet/nipet/lm_sig/hst_sig.py|154 col 9| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|157 col 1| W293 blank line contains whitespace
niftypet/nipet/lm_sig/hst_sig.py|159 col 5| E303 too many blank lines (3)
niftypet/nipet/lm_sig/hst_sig.py|166 col 1| W293 blank line contains whitespace
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niftypet/nipet/lm_sig/hst_sig.py|178 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|197 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|197 col 12| C408 Unnecessary dict call - rewrite as a literal.
niftypet/nipet/lm_sig/hst_sig.py|209 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|211 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|212 col 42| B008 Do not perform function calls in argument defaults. The call is performed only once at function definition time. All calls to your function will reuse the result of that definition-time function call. If this is intended, assign the function call to a module-level variable and use that variable as a default value.
niftypet/nipet/lm_sig/hst_sig.py|212 col 100| E501 line too long (134 > 99 characters)
niftypet/nipet/lm_sig/hst_sig.py|212 col 132| E202 whitespace before ')'
niftypet/nipet/lm_sig/hst_sig.py|218 col 5| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|233 col 28| W291 trailing whitespace
niftypet/nipet/lm_sig/hst_sig.py|250 col 5| F841 local variable 'bval' is assigned to but never used
niftypet/nipet/lm_sig/hst_sig.py|256 col 5| E303 too many blank lines (2)
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niftypet/nipet/lm_sig/init.py|3 col 1| F401 '.hst_sig' imported but unused
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flake8
niftypet/nipet/aux_sig.py|194 col 17| E265 block comment should start with '# '
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niftypet/nipet/lm_sig/hst_sig.py|2 col 1| F401 'sys' imported but unused
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niftypet/nipet/lm_sig/hst_sig.py|197 col 12| C408 Unnecessary dict call - rewrite as a literal.
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niftypet/nipet/lm_sig/hst_sig.py|212 col 42| B008 Do not perform function calls in argument defaults. The call is performed only once at function definition time. All calls to your function will reuse the result of that definition-time function call. If this is intended, assign the function call to a module-level variable and use that variable as a default value.
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niftypet/nipet/lm_sig/init.py|2 col 1| F401 '.lmproc_sig' imported but unused
niftypet/nipet/lm_sig/init.py|3 col 1| F401 '.hst_sig' imported but unused
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flake8
niftypet/nipet/lm_sig/hst_sig.py|9 col 1| F401 'math.pi' imported but unused
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niftypet/nipet/lm_sig/hst_sig.py|197 col 12| C408 Unnecessary dict call - rewrite as a literal.
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niftypet/nipet/lm_sig/hst_sig.py|212 col 42| B008 Do not perform function calls in argument defaults. The call is performed only once at function definition time. All calls to your function will reuse the result of that definition-time function call. If this is intended, assign the function call to a module-level variable and use that variable as a default value.
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niftypet/nipet/lm_sig/init.py|2 col 1| F401 '.lmproc_sig' imported but unused
niftypet/nipet/lm_sig/init.py|3 col 1| F401 '.hst_sig' imported but unused
| @@ -32,3 +32,12 @@ install(EXPORT ${PROJECT_NAME}Targets FILE NiftyPET${PROJECT_NAME}Targets.cmake | |||
| add_subdirectory(lm) | |||
| add_subdirectory(prj) | |||
| add_subdirectory(sct) | |||
| # HDF5 needed for GE data | |||
| set(HDF5_ROOT "/usr/local/hdf5/") | |||
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TODO: don't hardcode (or at least don't override without first checking if already set)
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Remaining comments which cannot be posted as a review comment to avoid GitHub Rate Limit
flake8
niftypet/nipet/lm_sig/hst_sig.py|144 col 100| E501 line too long (124 > 99 characters)
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niftypet/nipet/lm_sig/hst_sig.py|197 col 5| E303 too many blank lines (2)
niftypet/nipet/lm_sig/hst_sig.py|197 col 12| C408 Unnecessary dict call - rewrite as a literal.
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niftypet/nipet/lm_sig/hst_sig.py|211 col 1| E265 block comment should start with '# '
niftypet/nipet/lm_sig/hst_sig.py|212 col 42| B008 Do not perform function calls in argument defaults. The call is performed only once at function definition time. All calls to your function will reuse the result of that definition-time function call. If this is intended, assign the function call to a module-level variable and use that variable as a default value.
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niftypet/nipet/lm_sig/hst_sig.py|250 col 5| F841 local variable 'bval' is assigned to but never used
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niftypet/nipet/lm_sig/init.py|2 col 1| F401 '.lmproc_sig' imported but unused
niftypet/nipet/lm_sig/init.py|3 col 1| F401 '.hst_sig' imported but unused
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Remaining comments which cannot be posted as a review comment to avoid GitHub Rate Limit
flake8
niftypet/nipet/lm_sig/hst_sig.py|262 col 15| E231 missing whitespace after ':'
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niftypet/nipet/lm_sig/hst_sig.py|324 col 1| W391 blank line at end of file
niftypet/nipet/lm_sig/init.py|2 col 1| F401 '.lmproc_sig' imported but unused
niftypet/nipet/lm_sig/init.py|3 col 1| F401 '.hst_sig' imported but unused
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