Addition of coverage tool to unit tests in workflow
#10
Workflow file for this run
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| name: "pyFV3 translate tests (subset)" | |
| on: | |
| workflow_call: | |
| inputs: | |
| component_trigger: | |
| type: boolean | |
| default: false | |
| required: false | |
| component_name: | |
| type: string | |
| default: '' | |
| required: false | |
| pull_request: | |
| # cancel running jobs if theres a newer push | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pyFV3_translate_tests: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/noaa-gfdl/miniforge:mpich | |
| steps: | |
| - name: External trigger Checkout pyFV3 | |
| if: ${{inputs.component_trigger}} | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| repository: noaa-gfdl/pyFV3 | |
| path: pyFV3 | |
| - name: Checkout hash that triggered CI | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| path: pyFV3/${{inputs.component_name}} | |
| - name: External trigger install NDSL packages | |
| if: ${{inputs.component_trigger}} | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/pyFV3 | |
| cd NDSL && pip3 install .[test] && cd ../ | |
| pip3 install .[test] | |
| - name: Install pyFV3 packages | |
| if: ${{ ! inputs.component_trigger }} | |
| run : | | |
| cd ${GITHUB_WORKSPACE}/pyFV3 | |
| pip install .[ndsl,test] | |
| - name: Prepare test_data | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/pyFV3 | |
| mkdir -p test_data && cd test_data | |
| wget https://portal.nccs.nasa.gov/datashare/astg/smt/pace-regression-data/8.1.3_c12_6ranks_standard.tar.gz | |
| tar -xzvf 8.1.3_c12_6ranks_standard.tar.gz --no-same-owner | |
| cd .. | |
| - name: NumPy FvTp2d | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/pyFV3 | |
| coverage run --rcfile=setup.cfg -m pytest \ | |
| -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \ | |
| --backend=numpy \ | |
| --which_modules=FvTp2d \ | |
| --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \ | |
| ./tests/savepoint | |
| - name: Numpy D_SW | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/pyFV3 | |
| coverage run --rcfile=setup.cfg -m pytest \ | |
| -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \ | |
| --backend=numpy \ | |
| --which_modules=D_SW \ | |
| --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \ | |
| ./tests/savepoint | |
| - name: Numpy Remapping | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/pyFV3 | |
| coverage run --rcfile=setup.cfg -m pytest \ | |
| -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \ | |
| --backend=numpy \ | |
| --which_modules=Remapping \ | |
| --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \ | |
| ./tests/savepoint | |
| - name: Orchestrated dace-cpu Acoustics | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/pyFV3 | |
| export FV3_DACEMODE=BuildAndRun | |
| export PACE_FLOAT_PRECISION=64 | |
| export PACE_TEST_N_THRESHOLD_SAMPLES=0 | |
| export OMP_NUM_THREADS=1 | |
| export PACE_LOGLEVEL=Debug | |
| mpiexec -mca orte_abort_on_non_zero_status 1 -np 6 --oversubscribe coverage run --rcfile=setup.cfg -m mpi4py -m pytest \ | |
| -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \ | |
| --backend=dace:cpu \ | |
| -m parallel \ | |
| --which_rank=0 \ | |
| --which_modules=DynCore \ | |
| --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \ | |
| ./tests/savepoint |