Stage atmospheric backgrounds and UFS cubed-sphere history files

parm/config/gfs/config.base

@@ -453,6 +453,8 @@ export binary_diag=".false."
 
 # Verification options
 export DO_METP="@DO_METP@"   # Run METPLUS jobs - set METPLUS settings in config.metp
+# TODO Reenable METplus jobs when issue #2790 is resolved
+export DO_METP="NO"
 export DO_FIT2OBS="YES"      # Run fit to observations package
 export DO_VRFY_OCEANDA="@DO_VRFY_OCEANDA@"  # Run SOCA Ocean and Seaice DA verification tasks
 

parm/gdas/staging/atm_lgetkf_bkg.yaml.j2

@@ -1,6 +1,3 @@
-{% set ftype_list = ['fv_core.res', 'fv_srf_wnd.res', 'fv_tracer.res', 'phy_data', 'sfc_data'] %}
-{% set time_list = [current_cycle] %}
-
 mkdir:
 {% for imem in range(1,NMEM_ENS+1) %}
    {% set memchar = 'mem%03d' | format(imem) %}
@@ -14,19 +11,13 @@ mkdir:
 - '{{ COM_ATMOS_ANALYSIS_TMPL | replace_tmpl(tmpl_dict) }}'
 {% endfor %}
 copy:
-{% for time in time_list %}
-   {% for imem in range(1,NMEM_ENS+1) %}
-      {% set memchar = 'mem%03d' | format(imem) %}
-      {% set tmpl_dict = ({ '${ROTDIR}': ROTDIR,
-      	      	      	    '${RUN}': 'enkfgdas',
-                            '${YMD}': previous_cycle | to_YMD,	
-                            '${HH}': previous_cycle | strftime('%H'),
-                            '${MEMDIR}': memchar }) %}
-- ['{{ COM_ATMOS_RESTART_TMPL | replace_tmpl(tmpl_dict) }}/{{ time | to_fv3time }}.coupler.res', '{{ DATA }}/bkg/{{ memchar }}/']
-      {% for ftype in ftype_list %}
-         {% for itile in range(1,7) %}
-- ['{{ COM_ATMOS_RESTART_TMPL | replace_tmpl(tmpl_dict) }}/{{ time | to_fv3time }}.{{ ftype }}.tile{{ itile }}.nc', '{{ DATA }}/bkg/{{ memchar }}/']
-         {% endfor %}
-      {% endfor %}
-   {% endfor %}
+{% for imem in range(1,NMEM_ENS+1) %}
+   {% set memchar = 'mem%03d' | format(imem) %}
+   {% set tmpl_dict = ({ '${ROTDIR}': ROTDIR,
+                         '${RUN}': 'enkfgdas',
+                         '${YMD}': previous_cycle | to_YMD,	
+                         '${HH}': previous_cycle | strftime('%H'),
+                         '${MEMDIR}': memchar }) %}
+- ['{{ COM_ATMOS_HISTORY_TMPL | replace_tmpl(tmpl_dict) }}/enkf{{ GPREFIX }}cubed_sphere_grid_atmf006.nc', '{{ DATA }}/bkg/{{ memchar }}/']
+- ['{{ COM_ATMOS_HISTORY_TMPL | replace_tmpl(tmpl_dict) }}/enkf{{ GPREFIX }}cubed_sphere_grid_sfcf006.nc', '{{ DATA }}/bkg/{{ memchar }}/']
 {% endfor %}

parm/gdas/staging/atm_var_bkg.yaml.j2

@@ -1,14 +1,5 @@
-{% set ftype_list = ['fv_core.res', 'fv_srf_wnd.res', 'fv_tracer.res', 'phy_data', 'sfc_data'] %}
-{% set time_list = [current_cycle] %}
-
 mkdir:
 - '{{ DATA }}/bkg'
 copy:
-{% for time in time_list %}
-- ['{{ COM_ATMOS_RESTART_PREV }}/{{ time | to_fv3time }}.coupler.res', '{{ DATA }}/bkg/']
-   {% for ftype in ftype_list %}
-      {% for itile in range(1,ntiles+1) %}
-- ['{{ COM_ATMOS_RESTART_PREV }}/{{ time | to_fv3time }}.{{ ftype }}.tile{{ itile }}.nc', '{{ DATA }}/bkg/']
-      {% endfor %}
-   {% endfor %}
-{% endfor %}
+- ['{{ COM_ATMOS_HISTORY_PREV }}/{{ GPREFIX }}cubed_sphere_grid_atmf006.nc', '{{ DATA }}/bkg/']
+- ['{{ COM_ATMOS_HISTORY_PREV }}/{{ GPREFIX }}cubed_sphere_grid_sfcf006.nc', '{{ DATA }}/bkg/']

parm/gdas/staging/atm_var_fv3ens.yaml.j2

@@ -1,24 +1,15 @@
-{% set ftype_list = ['fv_core.res', 'fv_srf_wnd.res', 'fv_tracer.res', 'phy_data', 'sfc_data'] %}
-{% set time_list = [current_cycle] %}
-
 mkdir:
 {% for imem in range(1,NMEM_ENS+1) %}
 - '{{ DATA }}/ens/{{ 'mem%03d' | format(imem) }}'
 {% endfor %}
 copy:
-{% for time in time_list %}
-   {% for imem in range(1,NMEM_ENS+1) %}
-      {% set memchar = 'mem%03d' | format(imem) %}
-      {% set tmpl_dict = ({ '${ROTDIR}': ROTDIR,
-                            '${RUN}': 'enkfgdas',
-                            '${YMD}': previous_cycle | to_YMD,
-                            '${HH}': previous_cycle | strftime('%H'),
-                            '${MEMDIR}': memchar }) %}
-- ['{{ COM_ATMOS_RESTART_TMPL | replace_tmpl(tmpl_dict) }}/{{ time | to_fv3time }}.coupler.res', '{{ DATA }}/ens/{{ memchar }}/']
-      {% for ftype in ftype_list %}
-         {% for itile in range(1,ntiles+1) %}
-- ['{{ COM_ATMOS_RESTART_TMPL | replace_tmpl(tmpl_dict) }}/{{ time | to_fv3time }}.{{ ftype }}.tile{{ itile }}.nc', '{{ DATA }}/ens/{{ memchar }}/']
-         {% endfor %}
-      {% endfor %}
-   {% endfor %}
+{% for imem in range(1,NMEM_ENS+1) %}
+   {% set memchar = 'mem%03d' | format(imem) %}
+   {% set tmpl_dict = ({ '${ROTDIR}': ROTDIR,
+                         '${RUN}': 'enkfgdas',
+                         '${YMD}': previous_cycle | to_YMD,
+                         '${HH}': previous_cycle | strftime('%H'),
+                         '${MEMDIR}': memchar }) %}
+- ['{{ COM_ATMOS_HISTORY_TMPL | replace_tmpl(tmpl_dict) }}/enkf{{ GPREFIX }}cubed_sphere_grid_atmf006.nc', '{{ DATA }}/ens/{{ memchar }}/']
+- ['{{ COM_ATMOS_HISTORY_TMPL | replace_tmpl(tmpl_dict) }}/enkf{{ GPREFIX }}cubed_sphere_grid_sfcf006.nc', '{{ DATA }}/ens/{{ memchar }}/']
 {% endfor %}

ush/forecast_postdet.sh

@@ -209,6 +209,8 @@ EOF
       ${NLN} "${COMOUT_ATMOS_HISTORY}/${RUN}.t${cyc}z.atmf${FH3}.nc" "atmf${FH3}.nc"
       ${NLN} "${COMOUT_ATMOS_HISTORY}/${RUN}.t${cyc}z.sfcf${FH3}.nc" "sfcf${FH3}.nc"
       ${NLN} "${COMOUT_ATMOS_HISTORY}/${RUN}.t${cyc}z.atm.logf${FH3}.txt" "log.atm.f${FH3}"
+      ${NLN} "${COMOUT_ATMOS_HISTORY}/${RUN}.t${cyc}z.cubed_sphere_grid_atmf${FH3}.nc" "cubed_sphere_grid_atmf${FH3}.nc"
+      ${NLN} "${COMOUT_ATMOS_HISTORY}/${RUN}.t${cyc}z.cubed_sphere_grid_sfcf${FH3}.nc" "cubed_sphere_grid_sfcf${FH3}.nc"
       if [[ "${WRITE_DOPOST}" == ".true." ]]; then
         ${NLN} "${COMOUT_ATMOS_MASTER}/${RUN}.t${cyc}z.master.grb2f${FH3}" "GFSPRS.GrbF${FH2}"
         ${NLN} "${COMOUT_ATMOS_MASTER}/${RUN}.t${cyc}z.sfluxgrbf${FH3}.grib2" "GFSFLX.GrbF${FH2}"

ush/parsing_model_configure_FV3.sh

@@ -31,15 +31,15 @@ local WRITE_GROUP=${WRITE_GROUP:-1}
 local WRTTASK_PER_GROUP=${WRTTASK_PER_GROUP:-24}
 local ITASKS=1
 local OUTPUT_HISTORY=${OUTPUT_HISTORY:-".true."}
-local HISTORY_FILE_ON_NATIVE_GRID=".false."
+local HISTORY_FILE_ON_NATIVE_GRID=".true."
 local WRITE_DOPOST=${WRITE_DOPOST:-".false."}
 local WRITE_NSFLIP=${WRITE_NSFLIP:-".false."}
 local NUM_FILES=${NUM_FILES:-2}
 local FILENAME_BASE="'atm' 'sfc'"
 # OUTPUT_GRID
 local OUTPUT_FILE="'${OUTPUT_FILETYPE_ATM}' '${OUTPUT_FILETYPE_SFC}'"
 local ZSTANDARD_LEVEL=0
-local IDEFLATE=1  # netCDF zlib lossless compression (0-9); 0: no compression
+local IDEFLATE=0  # netCDF zlib lossless compression (0-9); 0: no compression
 local QUANTIZE_NSD=${QUANTIZE_NSD:-0}  # netCDF compression
 local ICHUNK2D=$((4*restile))
 local JCHUNK2D=$((2*restile))