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Update for JCB policies and stage DA job files with Jinja2-templates #2700

Merged
merged 91 commits into from
Jul 1, 2024
Merged

Update for JCB policies and stage DA job files with Jinja2-templates #2700

merged 91 commits into from
Jul 1, 2024

Commits on May 29, 2024

  1. Use rename_atm of jcb parm erpos

    @danholdaway
    danholdaway committed May 29, 2024
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Commits on May 31, 2024

  1. Initial commit

    @DavidNew-NOAA
    DavidNew-NOAA committed May 31, 2024
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Commits on Jun 3, 2024

  1. Update atm_berror_bump_fix.yaml.j2

    @DavidNew-NOAA
    DavidNew-NOAA authored Jun 3, 2024
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  2. Update atm_berror_gsibec_fix.yaml.j2

    @DavidNew-NOAA
    DavidNew-NOAA authored Jun 3, 2024
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  3. Update atm_berror_identity_fix.yaml.j2

    @DavidNew-NOAA
    DavidNew-NOAA authored Jun 3, 2024
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  4. Update atm_bkg_fix.yaml.j2

    @DavidNew-NOAA
    DavidNew-NOAA authored Jun 3, 2024
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  5. Rename some things

    @DavidNew-NOAA
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  6. Merge branch 'feature/stage_from_yaml' of https://github.com/DavidNew… 

    …-NOAA/global-workflow into feature/stage_from_yaml
    @DavidNew-NOAA
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  7. Rename some things

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 3, 2024
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  8. Add changes to analysis python scripts

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 3, 2024
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Commits on Jun 4, 2024

  1. update hashes and config

    @danholdaway
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  2. Merge remote-tracking branch 'upsteam/develop' into feature/rename_atm 

    * upsteam/develop:
  Archiving cleanup (NOAA-EMC#2621)
  Switch to Rocky 9 built external packages on Hercules (NOAA-EMC#2608)
  Add the capability to use slurm reservation nodes (NOAA-EMC#2627)
  Update forecast job to use COMIN/COMOUT (NOAA-EMC#2622)
  Update to add 1-deg global wave grid (NOAA-EMC#2619)
  Add C384mx025_3DVarAOWCDA yamls (NOAA-EMC#2625)
  Script to keep Jenkins Agent persistent from cron (NOAA-EMC#2634)
    @danholdaway
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  3. Merge branch 'develop' into feature/stage_from_yaml

    @DavidNew-NOAA
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  4. Merge branch 'develop' into feature/stage_from_yaml

    @DavidNew-NOAA
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  5. Minor fix

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 4, 2024
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  6. Minor update

    @DavidNew-NOAA
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  7. Minor update

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 4, 2024
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  8. Coding norms

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 4, 2024
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  9. Remove jcb from GW submodules

    @danholdaway
    danholdaway committed Jun 4, 2024
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  10. Remove JCB

    @danholdaway
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  11. adjust link to point to new jcb location in gdasapp

    @danholdaway
    danholdaway committed Jun 4, 2024
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  12. Update GDASapp Hash

    @danholdaway
    danholdaway committed Jun 4, 2024
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  13. Move some stuff around

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 4, 2024
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  14. Merge remote-tracking branch 'upsteam/develop' into feature/rename_atm 

    * upsteam/develop:
  Update ufs-weather-model  (NOAA-EMC#2646)
  Update wmo parm files to fix WMO header (NOAA-EMC#2652)
  Add IAU to snow DA (and its test) (NOAA-EMC#2610)
    @danholdaway
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  15. gdas hash

    @danholdaway
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Commits on Jun 5, 2024

  1. Add time loop for some staging

    @DavidNew-NOAA
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Commits on Jun 6, 2024

  1. bump gdas

    @danholdaway
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  2. bump gdas

    @danholdaway
    danholdaway committed Jun 6, 2024
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  3. Merge branch 'NOAA-EMC:develop' into feature/stage_from_yaml

    @DavidNew-NOAA
    DavidNew-NOAA authored Jun 6, 2024
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  4. hashes

    @danholdaway
    danholdaway committed Jun 6, 2024
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  5. update gdas hash

    @danholdaway
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  6. Merge remote-tracking branch 'upstream/develop' into feature/move_jcb 

    * upstream/develop:
  Parameterize some things in config.atmanl and config.atmensanl (NOAA-EMC#2661)
  Add links to the ocean insitu obs processing tools (NOAA-EMC#2644)
  Update S4 point of contact in docs (NOAA-EMC#2660)
  Enable wcoss2 ufsda build and module load (NOAA-EMC#2620)
    @danholdaway
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  7. bring russ change in

    @danholdaway
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  8. follow russ for GSI utils hash

    @danholdaway
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Commits on Jun 7, 2024

  1. revert gsi utils

    @danholdaway
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  2. Merge branch 'develop' into feature/move_jcb

    @danholdaway
    danholdaway authored Jun 7, 2024
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  3. Remove all references to mytask.config and mytask.runtime_config

    @DavidNew-NOAA
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  4. Merge branch 'develop' into feature/stage_from_yaml

    @DavidNew-NOAA
    DavidNew-NOAA authored Jun 7, 2024
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  5. Update wxflow hash

    @DavidNew-NOAA
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Commits on Jun 11, 2024

  1. Merge branch 'develop' into feature/move_jcb

    @danholdaway
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  2. Merge branch 'develop' into feature/stage_from_yaml

    @DavidNew-NOAA
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  3. Tab out Jinja2 templates for readability

    @DavidNew-NOAA
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Commits on Jun 12, 2024

  1. Merge branch 'develop' into feature/move_jcb

    @danholdaway
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  2. Merge branch 'develop' into feature/stage_from_yaml

    @DavidNew-NOAA
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  3. Merge branch 'develop' into feature/move_jcb

    @danholdaway
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Commits on Jun 13, 2024

  1. update gdas hash

    @danholdaway
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  2. Merge branch 'feature/move_jcb' of https://github.com/danholdaway/glo… 

    …bal-workflow into feature/move_jcb

* 'feature/move_jcb' of https://github.com/danholdaway/global-workflow:
  Add COM template for JEDI obs (NOAA-EMC#2678)
  Link both global-nest fix files and non-nest ones at the same time (NOAA-EMC#2632)
  Update ufs-weather-model  (NOAA-EMC#2663)
  Add ability to process ocean/ice products specific to GEFS (NOAA-EMC#2561)
  Update cleanup job to use COMIN/COMOUT (NOAA-EMC#2649)
  Add overwrite to creat experiment in BASH CI (NOAA-EMC#2676)
  Add handling to select CRTM cloud optical table based on cloud scheme and update calcanal_gfs.py  (NOAA-EMC#2645)
  Update RDHPCS Hera resource for `eupd` task (NOAA-EMC#2636)
    @danholdaway
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  3. Use replace_tmpl filter

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 13, 2024
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  4. Update wxflow hash

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 13, 2024
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  5. Merge remote-tracking branch 'upstream/develop' into feature/move_jcb 

    * upstream/develop:
  Add Hercules-EMC to the Jenkins configurable parameter list (NOAA-EMC#2685)
  Update gdas.cd and gsi_utils hashes (NOAA-EMC#2641)
  Add ability to use GEFS replay ICs (NOAA-EMC#2559)
  Replace `sleep` with `wait_for_file` (NOAA-EMC#2586)
    @danholdaway
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  6. Merge branch 'develop' into feature/move_jcb

    @WalterKolczynski-NOAA
    WalterKolczynski-NOAA authored Jun 13, 2024
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  7. update to latest gdas app

    @danholdaway
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  8. mod

    @danholdaway
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  9. add back ufsutils

    @danholdaway
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Commits on Jun 14, 2024

  1. Update wxflow hash and fix big in lgetkf staging file

    @DavidNew-NOAA
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Commits on Jun 17, 2024

  1. Merge branch 'develop' into feature/stage_from_yaml

    @DavidNew-NOAA
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  2. Merge branch 'develop' into feature/stage_from_yaml

    @DavidNew-NOAA
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  3. Merge branch 'feature/stage_from_yaml' of https://github.com/DavidNew… 

    …-NOAA/global-workflow into feature/stage_from_yaml
    @DavidNew-NOAA
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  4. Simplify Jinja2 templates a bit

    @DavidNew-NOAA
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  5. Replace CDUMP with RUN

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 17, 2024
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  6. Fix bug

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. Merge branch 'feature/rename_atm' of https://github.com/danholdaway/g… 

    …lobal-workflow into feature/rename_atm
    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 18, 2024
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  2. update gdas.cd hash to bring in updated jcb, jcb-gdas, and jcb-algori… 

    …thms
    @RussTreadon-NOAA
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Commits on Jun 19, 2024

  1. Merge branch 'NOAA-EMC:develop' into feature/rename_atm

    @RussTreadon-NOAA
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Commits on Jun 20, 2024

  1. Merge branch 'NOAA-EMC:develop' into feature/rename_atm

    @RussTreadon-NOAA
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  2. Merge branch 'develop' into feature/stage_from_yaml

    @DavidNew-NOAA
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  3. remove path specific logic to identify MSU machines (NOAA-EMC#2695)

    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 20, 2024
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  4. add ocnanalecen to HERCULES.env (NOAA-EMC#2699)

    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 20, 2024
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  5. fix shellcheck error in detect_machine.sh (NOAA-EMC#2695)

    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 20, 2024
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  6. fix pycodestyle error in hosts.py (NOAA-EMC#2695)

    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 20, 2024
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  7. Updates

    @DavidNew-NOAA
    DavidNew-NOAA committed Jun 20, 2024
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  8. Refactor aero_prepobs.py like other tasks

    @DavidNew-NOAA
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  9. Update wxflow hash

    @DavidNew-NOAA
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Commits on Jun 21, 2024

  1. Merge remote-tracking branch 'upstream/feature/stage_from_yaml' into … 

    …feature/rename_atm
    @RussTreadon-NOAA
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  2. update gdas.cd to resolve wxflow issues and update jcb hashes (NOAA-E… 

    …MC#2699)
    @RussTreadon-NOAA
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  3. Merge branch 'develop' into feature/rename_atm

    @RussTreadon-NOAA
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Commits on Jun 22, 2024

  1. add wxflow to PYTHONPATH for ufsda jobs; update prep_snow_obs script … 

    …to use task_config (NOAA-EMC#2654)
    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 22, 2024
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Commits on Jun 23, 2024

  1. simply wxflow path for ufsda jobs (NOAA-EMC#2654)

    @RussTreadon-NOAA
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  2. update gdas.cd hash to fix issues with aero and soca DA (NOAA-EMC#2700)

    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 23, 2024
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Commits on Jun 24, 2024

  1. do not set wxflowPATH in rocoto j-job drivers, add wxflowPATH to load… 

    …_fv3gfs_modules (NOAA-EMC#2700)
    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 24, 2024
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  2. update gdas.cd hash to simplify wxflowpath in GDASApp ctests (NOAA-EM… 

    …C#2700)
    @RussTreadon-NOAA
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  3. Merge branch 'develop' into feature/rename_atm

    @aerorahul
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  4. add g-w python to PYTHONPATH on WCOSS2 in upp.sh (NOAA-EMC#2700)

    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 24, 2024
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Commits on Jun 25, 2024

  1. Merge branch 'develop' into feature/rename_atm

    @RussTreadon-NOAA
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Commits on Jun 26, 2024

  1. Merge branch 'develop' into feature/rename_atm

    @aerorahul
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  2. Merge branch 'NOAA-EMC:develop' into feature/rename_atm

    @RussTreadon-NOAA
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  3. Merge branch 'develop' into feature/rename_atm

    @RussTreadon-NOAA
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Commits on Jun 27, 2024

  1. Merge branch 'develop' into feature/rename_atm

    @RussTreadon-NOAA
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Commits on Jun 28, 2024

  1. comment out find lines for purge_every_days (NOAA-EMC#2719)

    @RussTreadon-NOAA
    RussTreadon-NOAA committed Jun 28, 2024
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  2. Update scripts/exglobal_cleanup.sh

    @aerorahul
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  3. Merge branch 'develop' into feature/rename_atm

    @RussTreadon-NOAA
    RussTreadon-NOAA authored Jun 28, 2024
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