Update gempak job to run one fcst hour per task

jobs/JGFS_ATMOS_GEMPAK

@@ -6,8 +6,6 @@
 ############################################
 # Set up model and cycle specific variables
 ############################################
-export finc=${finc:-3}
-export fstart=${fstart:-0}
 export model=${model:-gfs}
 export GRIB=${GRIB:-pgrb2f}
 export EXT=""
@@ -16,11 +14,6 @@
 # For half-degree P Grib files
 export DO_HD_PGRB=${DO_HD_PGRB:-YES}
 
-###################################
-# Specify NET and RUN Name and model
-####################################
-export model=${model:-gfs}
-
 ##############################################
 # Define COM directories
 ##############################################
@@ -40,73 +33,129 @@
   fi
 done
 
-# TODO: These actions belong in an ex-script not a j-job
-if [[ -f poescript ]]; then
-   rm -f poescript
-fi
-
 ocean_domain_max=180
 if (( ocean_domain_max > FHMAX_GFS )); then
   ocean_domain_max=${FHMAX_GFS}
 fi
 
-{
-  #################################################################
-  # Execute the script for the 384 hour 1 degree grib
-  ##################################################################
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 1p00 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_1p00}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 1p00 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_1p00}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 1p00 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_1p00}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 1p00 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_1p00}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 1p00 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_1p00}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 1p00 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_1p00}"
-
-  #################################################################
-  # Execute the script for the half-degree grib
-  ##################################################################
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50}"
-
-  #################################################################
-  # Execute the script for the quater-degree grib
-  ####################################################################
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25}"
-
-  ####################################################################
-  # Execute the script to create the 35km Pacific grids for OPC
-  #####################################################################
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 35km_pac ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_35km_pac}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 35km_pac ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_35km_pac}"
-
-  ####################################################################
-  # Execute the script to create the 35km Atlantic grids for OPC
-  #####################################################################
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 35km_atl ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_35km_atl}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 35km_atl ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_35km_atl}"
-
-  #####################################################################
-  # Execute the script to create the 40km grids for HPC
-  ######################################################################
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 40km ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_40km}"
-  echo "time ${SCRgfs}/exgfs_atmos_nawips.sh 40km ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_40km}"
-} > poescript
-
-cat poescript
-
-"${HOMEgfs}/ush/run_mpmd.sh" poescript
+#################################################################
+# Execute the script for the 384 hour 1 degree grib
+##################################################################
+fhmin=0
+fhmax=240
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 3 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 1p00 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_1p00} ${fcsthrs}
+  fi
+fi
+
+fhmin=252
+fhmax=384
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 12 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 1p00 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_1p00} ${fcsthrs}
+  fi
+fi
+
+#################################################################
+# Execute the script for the half-degree grib
+##################################################################
+fhmin=0
+fhmax=240
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 3 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50} ${fcsthrs}
+  fi
+fi
+
+fhmin=246
+fhmax=276
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 6 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50} ${fcsthrs}
+  fi
+fi
+
+fhmin=288
+fhmax=384
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 12 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 0p50 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p50} ${fcsthrs}
+  fi
+fi
+
+#################################################################
+# Execute the script for the quater-degree grib
+####################################################################
+fhmin=0
+fhmax=120
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 1 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25} ${fcsthrs}
+  fi
+fi
+
+fhmin=123
+fhmax=240
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 3 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25} ${fcsthrs}
+  fi
+fi
+
+fhmin=252
+fhmax=384
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 12 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 0p25 ${FHMAX_GFS} GFS_GEMPAK ${COM_ATMOS_GEMPAK_0p25} ${fcsthrs}
+  fi
+fi
+
+####################################################################
+# Execute the script to create the 35km Pacific grids for OPC
+#####################################################################
+fhmin=0
+fhmax=180
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 3 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 35km_pac ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_35km_pac} ${fcsthrs}
+  fi
+fi
+
+if (( ${fcsthrs} > fhmax )); then
+  continue
+fi
+
+####################################################################
+# Execute the script to create the 35km Atlantic grids for OPC
+#####################################################################
+fhmin=0
+fhmax=180
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 3 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 35km_atl ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_35km_atl} ${fcsthrs}
+  fi
+fi
+
+if (( ${fcsthrs} > fhmax )); then
+  continue
+fi
+
+#####################################################################
+# Execute the script to create the 40km grids for HPC
+######################################################################
+fhmin=0
+fhmax=180
+if (( ${fcsthrs} >= fhmin && ${fcsthrs} <= fhmax )); then
+  if ((${fcsthrs} % 3 == 0)); then
+    time ${SCRgfs}/exgfs_atmos_nawips.sh 40km ${ocean_domain_max} GFS_GEMPAK_WWB ${COM_ATMOS_GEMPAK_40km} ${fcsthrs}
+  fi
+fi
+
+if (( ${fcsthrs} > fhmax )); then
+  continue
+fi
+
 export err=$?; err_chk
 
 ############################################

jobs/rocoto/gempak.sh

@@ -1,17 +1,29 @@
 #! /usr/bin/env bash
 
 source "${HOMEgfs}/ush/preamble.sh"
-
-###############################################################
-. "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+(( status != 0 )) && exit "${status}"
 
 export job="gempak"
 export jobid="${job}.$$"
 
+source "${HOMEgfs}/ush/jjob_header.sh" -e "gempak" -c "base gempak"
+
+fhrlst=$(echo "${FHRLST}" | sed -e 's/_/ /g; s/f/ /g; s/,/ /g')
+
+for fhr3 in ${fhrlst}; do
+    fhr=$(( 10#${fhr3} ))
+    if (( fhr > FHMAX_GFS )); then
+	echo "Nothing to process for FHR = ${fhr3}, cycle"
+	continue
+    fi
+
+    export fcsthrs="${fhr3}"
+
 # Execute the JJOB
-"${HOMEgfs}/jobs/J${RUN^^}_ATMOS_GEMPAK"
+    "${HOMEgfs}/jobs/J${RUN^^}_ATMOS_GEMPAK"
+done
 
 status=$?
 exit "${status}"