Updates for cold start half cycle, then continuing with IAU for WCDA

scripts/exglobal_archive.sh

@@ -237,7 +237,10 @@ if [[ ${HPSSARCH} = "YES" || ${LOCALARCH} = "YES" ]]; then
 
         #gdasocean
         if [ "${DO_OCN}" = "YES" ]; then
-            targrp_list="${targrp_list} gdasocean gdasocean_analysis"
+            targrp_list="${targrp_list} gdasocean"	  
+	    if [ "${DO_JEDIOCNVAR}" = "YES" ]; then
+                targrp_list="${targrp_list} gdasocean_analysis"
+            fi 
         fi
 
         #gdasice

ush/forecast_postdet.sh

@@ -478,11 +478,11 @@ MOM6_out() {
   # Coarser than 1/2 degree has a single MOM restart
   local mom6_restart_files mom6_restart_file restart_file
   mom6_restart_files=(MOM.res.nc)
-  # 1/4 degree resolution has 4 additional restarts
+  # 1/4 degree resolution has 3 additional restarts
   case "${OCNRES}" in
     "025")
       local nn
-      for (( nn = 1; nn <= 4; nn++ )); do
+      for (( nn = 1; nn <= 3; nn++ )); do
         mom6_restart_files+=("MOM.res_${nn}.nc")
       done
       ;;
@@ -500,22 +500,20 @@ MOM6_out() {
     done
   fi
 
-  # Copy restarts at the beginning/middle of the next assimilation cycle to COM for RUN=gdas|enkfgdas|enkfgfs
+  # Copy restarts in the assimilation window for RUN=gdas|enkfgdas|enkfgfs
   if [[ "${RUN}" =~ "gdas" || "${RUN}" == "enkfgfs" ]]; then
     local restart_date
-    if [[ "${DOIAU}" == "YES" ]]; then  # Copy restarts at the beginning of the next cycle from DATA to COM
-      restart_date="${next_cycle_begin}"
-    else  # Copy restarts at the middle of the next cycle from DATA to COM
-      restart_date="${next_cycle}"
-    fi
-    echo "Copying MOM6 restarts for 'RUN=${RUN}' at ${restart_date}"
-    for mom6_restart_file in "${mom6_restart_files[@]}"; do
-      restart_file="${restart_date:0:8}.${restart_date:8:2}0000.${mom6_restart_file}"
-      ${NCP} "${DATArestart}/MOM6_RESTART/${restart_file}" \
-             "${COM_OCEAN_RESTART}/${restart_file}"
+    restart_date=$(date --utc -d "${current_cycle:0:8} ${current_cycle:8:2} + ${restart_interval} hours" +%Y%m%d%H)
+    while (( restart_date < forecast_end_cycle )); do
+      echo "Copying MOM6 restarts for 'RUN=${RUN}' at ${restart_date}"
+      for mom6_restart_file in "${mom6_restart_files[@]}"; do
+	restart_file="${restart_date:0:8}.${restart_date:8:2}0000.${mom6_restart_file}"
+        ${NCP} "${DATArestart}/MOM6_RESTART/${restart_file}" \
+               "${COM_OCEAN_RESTART}/${restart_file}"
+      done
+      restart_date=$(date --utc -d "${restart_date:0:8} ${restart_date:8:2} + ${restart_interval} hours" +%Y%m%d%H)
     done
   fi
-
 }
 
 CICE_postdet() {
@@ -600,20 +598,21 @@ CICE_out() {
            "${COM_ICE_RESTART}/${target_file}"
   fi
 
-  # Copy restarts at the beginning/middle of the next assimilation cycle to COM for RUN=gdas|enkfgdas|enkfgfs
+  # Copy restarts in the assimilation window for RUN=gdas|enkfgdas|enkfgfs
   if [[ "${RUN}" =~ "gdas" || "${RUN}" == "enkfgfs" ]]; then
     local restart_date
-    if [[ "${DOIAU}" == "YES" ]]; then  # Copy restarts at the beginning of the next cycle from DATA to COM
-      restart_date="${next_cycle_begin}"
-    else  # Copy restarts at the middle of the next cycle from DATA to COM
-      restart_date="${next_cycle}"
-    fi
-    echo "Copying CICE restarts for 'RUN=${RUN}' at ${restart_date}"
-    seconds=$(to_seconds "${restart_date:8:2}0000")  # convert HHMMSS to seconds
-    source_file="cice_model.res.${restart_date:0:4}-${restart_date:4:2}-${restart_date:6:2}-${seconds}.nc"
-    target_file="${restart_date:0:8}.${restart_date:8:2}0000.cice_model.res.nc"
-    ${NCP} "${DATArestart}/CICE_RESTART/${source_file}" \
-           "${COM_ICE_RESTART}/${target_file}"
+    restart_date=$(date --utc -d "${current_cycle:0:8} ${current_cycle:8:2} + ${restart_interval} hours" +%Y%m%d%H)
+    while (( restart_date < forecast_end_cycle )); do
+
+      echo "Copying CICE restarts for 'RUN=${RUN}' at ${restart_date}"
+      seconds=$(to_seconds "${restart_date:8:2}0000")  # convert HHMMSS to seconds
+      source_file="cice_model.res.${restart_date:0:4}-${restart_date:4:2}-${restart_date:6:2}-${seconds}.nc"
+      target_file="${restart_date:0:8}.${restart_date:8:2}0000.cice_model.res.nc"
+      ${NCP} "${DATArestart}/CICE_RESTART/${source_file}" \
+             "${COM_ICE_RESTART}/${target_file}"
+
+      restart_date=$(date --utc -d "${restart_date:0:8} ${restart_date:8:2} + ${restart_interval} hours" +%Y%m%d%H)
+    done
   fi
 
 }

ush/hpssarch_gen.sh

@@ -560,13 +560,14 @@ if [[ ${type} == "gdas" ]]; then
       echo "${COM_MED_RESTART/${ROTDIR}\//}/*"
     } >> "${DATA}/gdasocean_restart.txt"
 
-    {
-      echo "${COM_OCEAN_ANALYSIS/${ROTDIR}\//}/${head}*"
-      echo "${COM_OCEAN_ANALYSIS/${ROTDIR}\//}/gdas.t??z.ocngrid.nc"
-      echo "${COM_OCEAN_ANALYSIS/${ROTDIR}\//}/diags"
-      echo "${COM_OCEAN_ANALYSIS/${ROTDIR}\//}/yaml"
-    } >> "${DATA}/gdasocean_analysis.txt"
-
+    if [[ ${DO_JEDIOCNVAR} = "YES" ]]; then
+      {
+        echo "${COM_OCEAN_ANALYSIS/${ROTDIR}\//}/${head}*"
+        echo "${COM_OCEAN_ANALYSIS/${ROTDIR}\//}/gdas.t??z.ocngrid.nc"
+        echo "${COM_OCEAN_ANALYSIS/${ROTDIR}\//}/diags"
+        echo "${COM_OCEAN_ANALYSIS/${ROTDIR}\//}/yaml"
+      } >> "${DATA}/gdasocean_analysis.txt"
+    fi
   fi
 
   if [[ ${DO_ICE} = "YES" ]]; then