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Splits AWIPS jobs into seperate tasks #2094

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10859c2
Corrected missing local variable reference.
henrywinterbottom-wxdev Nov 2, 2023
9df2539
Reverting push to develop.
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Merge branch 'develop' of https://github.com/HenryWinterbottom-NOAA/g…
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Merge branch 'develop' of https://github.com/HenryWinterbottom-NOAA/g…
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Merge branch 'develop' of https://github.com/HenryWinterbottom-NOAA/g…
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Merge branch 'develop' of https://github.com/HenryWinterbottom-NOAA/g…
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40f37ec
Merge branch 'develop' of https://github.com/HenryWinterbottom-NOAA/g…
henrywinterbottom-wxdev Nov 29, 2023
9297b1e
Added new AWIPS jobs for Rocoto.
henrywinterbottom-wxdev Nov 29, 2023
42dac7f
Removed no longer needed script.
henrywinterbottom-wxdev Nov 29, 2023
82c8f1b
Updated Rocoto applications.
henrywinterbottom-wxdev Nov 29, 2023
3e9a24c
Updates to test AWIPS job splitting.
henrywinterbottom-wxdev Nov 29, 2023
5c2b60a
Added tasks to GFS for AWIPS.
HenryRWinterbottom Nov 29, 2023
76d4e8c
Addressing issues raised by linter.
henrywinterbottom-wxdev Nov 29, 2023
7b41f31
Addressing issues raised by linter.
henrywinterbottom-wxdev Nov 29, 2023
763c516
Removed comment as per reviewer request.
henrywinterbottom-wxdev Nov 29, 2023
7e4e358
Renamed tasks as per reviewer suggestion.
henrywinterbottom-wxdev Nov 29, 2023
dd20e83
Updates relative to reviewer comments/suggestions.
henrywinterbottom-wxdev Nov 29, 2023
ea27c25
Update jobs/rocoto/awips_20sh.sh
HenryRWinterbottom Dec 1, 2023
46bf631
Merge branch 'NOAA-EMC:develop' into feature/gfsv17_issue_1228
HenryRWinterbottom Dec 1, 2023
920460b
Renamed files.
henrywinterbottom-wxdev Dec 1, 2023
df94d43
Files have been renamed.
henrywinterbottom-wxdev Dec 1, 2023
fb7fefb
Updated task names.
henrywinterbottom-wxdev Dec 1, 2023
3347e8e
Renamed file to reflect child JJOB.
henrywinterbottom-wxdev Dec 1, 2023
993956c
Updates to reflect upstream file updates.
henrywinterbottom-wxdev Dec 1, 2023
78aef53
File has been renamed.
henrywinterbottom-wxdev Dec 1, 2023
2977c86
Updated task names based on upstream commits.
henrywinterbottom-wxdev Dec 1, 2023
9ba2287
patch to reviewer comments on PR 2094
aerorahul Dec 1, 2023
a50f865
Merge pull request #1 from aerorahul/patch/2094
HenryRWinterbottom Dec 4, 2023
9cc697d
Merge branch 'NOAA-EMC:develop' into feature/gfsv17_issue_1228
HenryRWinterbottom Dec 4, 2023
1066a72
Update jobs/rocoto/awips_g2.sh
HenryRWinterbottom Dec 5, 2023
e9c9209
Update awips_g2.sh
aerorahul Dec 5, 2023
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20 changes: 8 additions & 12 deletions jobs/rocoto/awips.sh → jobs/rocoto/awips_20sh.sh
Original file line number Diff line number Diff line change
Expand Up @@ -19,22 +19,23 @@
status=$?
(( status != 0 )) && exit "${status}"

export job="awips"
export job="awips_20sh.sh"
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export jobid="${job}.$$"

# TODO (#1228) - This script is doing more than just calling a j-job
# Also, this forces us to call the config files here instead of the j-job
source "${HOMEgfs}/ush/jjob_header.sh" -e "awips" -c "base awips"
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Two things:

  1. Will the awips jobs still be calling the same single config?
  2. Can we remove this TODO comment with this PR since you're now addressing it?

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@KateFriedman-NOAA I addressed (2); I am not sure how to answer (1).

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@HenryWinterbottom-NOAA There should be new, separate config files and [MACHINE].env entries for each of the two new jobs. And really, probably separate config.resources entries as well.

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Before we end up making more configs, are they using the same resources; walltime, cores, etc.?

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If we use the resources from ops then they should be different resources in terms of walltime but same otherwise:

awips_20km_1p0:

#PBS -l walltime=00:10:00
#PBS -l select=1:ncpus=1:mem=3GB

https://github.com/NOAA-EMC/global-workflow/blob/dev/gfs.v16/ecf/scripts/gfs/atmos/post_processing/awips_20km_1p0/jgfs_atmos_awips_master.ecf#L6:L7

awips_g2:

#PBS -l walltime=00:05:00
#PBS -l select=1:ncpus=1:mem=3GB

https://github.com/NOAA-EMC/global-workflow/blob/dev/gfs.v16/ecf/scripts/gfs/atmos/post_processing/awips_g2/jgfs_atmos_awips_g2_master.ecf#L6:L7

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I left this same since the original script, awips.sh which was calling 2 j-jobs, was using a single configuration.

If this is still true, do we need extra configuration files?


fhrlst=$(echo ${FHRLST} | sed -e 's/_/ /g; s/f/ /g; s/,/ /g')
# shellcheck disable=SC2153
fhrlst=$(echo "${FHRLST}" | sed -e 's/_/ /g; s/f/ /g; s/,/ /g')

###############################################################

################################################################################
echo
echo "=============== BEGIN AWIPS ==============="

for fhr3 in ${fhrlst}; do
for fhr3 in "${fhrlst}"; do
Fixed Show fixed Hide fixed
fhr=$(( 10#${fhr3} ))
if (( fhr > FHMAX_GFS )); then
echo "Nothing to process for FHR = ${fhr3}, cycle"
Expand All @@ -45,22 +46,17 @@
fhmax=84
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Wondering if these should be configurable settings in config instead of being hardcoded (these are historically like this so perhaps now is the time to refine this).

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I think this needs to be done, but is outside the scope of this PR.

if (( fhr >= fhmin && fhr <= fhmax )); then
if ((fhr % 3 == 0)); then
export fcsthrs=${fhr3}
${AWIPS20SH}
fi

if ((fhr % 6 == 0)); then
${AWIPSG2SH}
export fcsthrs="${fhr3}"
"${AWIPS20SH}"
fi
fi

fhmin=90
fhmax=240
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Same thoughts....perhaps these fhmin and fhmax variables should be variables?

if (( fhr >= fhmin && fhr <= fhmax )); then
if ((fhr % 6 == 0)); then
export fcsthrs=${fhr3}
${AWIPS20SH}
${AWIPSG2SH}
export fcsthrs="${fhr3}"
"${AWIPS20SH}"
fi
fi
done
Expand Down
68 changes: 68 additions & 0 deletions jobs/rocoto/awips_g2sh.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,68 @@
#! /usr/bin/env bash

source "${HOMEgfs}/ush/preamble.sh"

###############################################################
## Abstract:
## Inline awips driver script
## HOMEgfs : /full/path/to/workflow
## EXPDIR : /full/path/to/config/files
## CDATE : current analysis date (YYYYMMDDHH)
## CDUMP : cycle name (gdas / gfs)
## PDY : current date (YYYYMMDD)
## cyc : current cycle (HH)
###############################################################

###############################################################
# Source FV3GFS workflow modules
source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
status=$?
(( status != 0 )) && exit "${status}"

export job="awips_g2sh"
export jobid="${job}.$$"

# TODO (#1228) - This script is doing more than just calling a j-job
# Also, this forces us to call the config files here instead of the j-job
source "${HOMEgfs}/ush/jjob_header.sh" -e "awips" -c "base awips"
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# shellcheck disable=SC2153
fhrlst=$(echo "${FHRLST}" | sed -e "s/_/ /g; s/f/ /g; s/,/ /g")

###############################################################

################################################################################
echo
echo "=============== BEGIN AWIPS ==============="

for fhr3 in "${fhrlst}"; do
Fixed Show fixed Hide fixed
fhr=$(( 10#${fhr3} ))
if (( fhr > FHMAX_GFS )); then
echo "Nothing to process for FHR = ${fhr3}, cycle"
continue
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If it is past FHMAX_GFS, there are no more forecasts. Should this be break?

fi

fhmin=0
fhmax=84
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See comment earlier about hardcoded values.

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@KateFriedman-NOAA I will wait for a consensus regarding hard-coded values.

if (( fhr >= fhmin && fhr <= fhmax )); then
if ((fhr % 6 == 0)); then
"${AWIPSG2SH}"
fi
fi

fhmin=90
fhmax=240
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See comment earlier about hardcoded values.

if (( fhr >= fhmin && fhr <= fhmax )); then
if ((fhr % 6 == 0)); then
export fcsthrs="${fhr3}"
"${AWIPSG2SH}"
fi
fi
done


###############################################################
# Force Exit out cleanly
if [[ ${KEEPDATA:-"NO"} == "NO" ]] ; then rm -rf "${DATA}" ; fi

exit 0
3 changes: 2 additions & 1 deletion workflow/applications/gfs_cycled.py
Original file line number Diff line number Diff line change
Expand Up @@ -234,7 +234,8 @@ def get_task_names(self):
gfs_tasks += ['gempak']

if self.do_awips:
gfs_tasks += ['awips']
gfs_tasks += ['awips_20sh']
gfs_tasks += ['awips_g2sh']
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Recommend following the ecflow job names even more closely throughout: awips_20km_1p0 and awips_g2

As seen in https://github.com/NOAA-EMC/global-workflow/blob/dev/gfs.v16/ecf/defs/gfs_v16_3.def

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Done.

gfs_tasks += ['fbwinds']

if self.do_npoess:
Expand Down
3 changes: 2 additions & 1 deletion workflow/applications/gfs_forecast_only.py
Original file line number Diff line number Diff line change
Expand Up @@ -119,7 +119,8 @@ def get_task_names(self):
tasks += ['gempak']

if self.do_awips:
tasks += ['awips']
tasks += ['awips_20sh']
tasks += ['awips_g2sh']
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tasks += ['fbwinds']

if self.do_wafs:
Expand Down
66 changes: 63 additions & 3 deletions workflow/rocoto/gfs_tasks.py
Original file line number Diff line number Diff line change
Expand Up @@ -822,7 +822,7 @@ def fbwinds(self):

return task

def awips(self):
def awips_20sh(self):

def _get_awipsgroups(cdump, config):

Expand Down Expand Up @@ -877,8 +877,68 @@ def _get_awipsgroups(cdump, config):
vardict = {varname2: varval2, varname3: varval3}

resources = self.get_resource('awips')
task = create_wf_task('awips', resources, cdump=self.cdump, envar=awipsenvars, dependency=dependencies,
metatask='awips', varname=varname1, varval=varval1, vardict=vardict)
task = create_wf_task('awips_20sh', resources, cdump=self.cdump, envar=awipsenvars, dependency=dependencies,
metatask='awips_20sh', varname=varname1, varval=varval1, vardict=vardict)

return task

def awips_g2sh(self):

def _get_awipsgroups(cdump, config):

fhmin = config['FHMIN']
fhmax = config['FHMAX']
fhout = config['FHOUT']

# Get a list of all forecast hours
fhrs = []
if cdump in ['gdas']:
fhrs = range(fhmin, fhmax + fhout, fhout)
elif cdump in ['gfs']:
fhmax = np.max(
[config['FHMAX_GFS_00'], config['FHMAX_GFS_06'], config['FHMAX_GFS_12'], config['FHMAX_GFS_18']])
fhout = config['FHOUT_GFS']
fhmax_hf = config['FHMAX_HF_GFS']
fhout_hf = config['FHOUT_HF_GFS']
if fhmax > 240:
fhmax = 240
if fhmax_hf > 240:
fhmax_hf = 240
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Do we want these hardcoded still or configurable (but still set to 240 for now)?

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I'd call this outside scope as well.

fhrs_hf = list(range(fhmin, fhmax_hf + fhout_hf, fhout_hf))
fhrs = fhrs_hf + list(range(fhrs_hf[-1] + fhout, fhmax + fhout, fhout))

nawipsgrp = config['NAWIPSGRP']
ngrps = nawipsgrp if len(fhrs) > nawipsgrp else len(fhrs)

fhrs = [f'f{fhr:03d}' for fhr in fhrs]
fhrs = np.array_split(fhrs, ngrps)
fhrs = [fhr.tolist() for fhr in fhrs]

grp = ' '.join([f'_{fhr[0]}-{fhr[-1]}' for fhr in fhrs])
dep = ' '.join([fhr[-1] for fhr in fhrs])
lst = ' '.join(['_'.join(fhr) for fhr in fhrs])

return grp, dep, lst
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deps = []
dep_dict = {'type': 'metatask', 'name': f'{self.cdump}post'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)

awipsenvars = self.envars.copy()
awipsenvar_dict = {'FHRGRP': '#grp#',
'FHRLST': '#lst#',
'ROTDIR': self._base.get('ROTDIR')}
for key, value in awipsenvar_dict.items():
awipsenvars.append(rocoto.create_envar(name=key, value=str(value)))

varname1, varname2, varname3 = 'grp', 'dep', 'lst'
varval1, varval2, varval3 = _get_awipsgroups(self.cdump, self._configs['awips'])
vardict = {varname2: varval2, varname3: varval3}

resources = self.get_resource('awips')
task = create_wf_task('awips_g2sh', resources, cdump=self.cdump, envar=awipsenvars, dependency=dependencies,
metatask='awips_g2sh', varname=varname1, varval=varval1, vardict=vardict)

return task

Expand Down
2 changes: 1 addition & 1 deletion workflow/rocoto/tasks.py
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ class Tasks:
'fcst', 'post', 'ocnpost',
'verfozn', 'verfrad', 'vminmon', 'metp',
'tracker', 'genesis', 'genesis_fsu',
'postsnd', 'awips', 'fbwinds', 'gempak',
'postsnd', 'awips_g2sh', 'awips_20sh', 'fbwinds', 'gempak',
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See comment earlier about job names.

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Done.

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Not sure why sh is needed in these names? IMO, they should be awips_g2 and awips_20km. The later is short for awips_20km_1p0deg. It is fine to use the full name and be clear.

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They were included to reflect the original awips.sh that called multiple j-job calls. For example,

    if (( fhr >= fhmin && fhr <= fhmax )); then
        if ((fhr % 6 == 0)); then
            export fcsthrs="${fhr3}"
            "${AWIPS20SH}"
            "${AWIPSG2SH}"
        fi
    fi

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I updated this to be consistent with @KateFriedman-NOAA's comment here.

This is the result for a GFS forecast-only 120-forecast using AWIPS (and no waves):

       CYCLE                    TASK                       JOBID               STATE         EXIT STATUS     TRIES      DURATION
================================================================================================================================
202103231200             gfsstage_ic         druby://hfe02:43701          SUBMITTING                   -         0           0.0
202103231200                 gfsfcst                           -                   -                   -         -             -
202103231200            gfspost_f000                           -                   -                   -         -             -
202103231200            gfspost_f006                           -                   -                   -         -             -
202103231200            gfspost_f012                           -                   -                   -         -             -
202103231200            gfspost_f018                           -                   -                   -         -             -
202103231200            gfspost_f024                           -                   -                   -         -             -
202103231200            gfspost_f030                           -                   -                   -         -             -
202103231200            gfspost_f036                           -                   -                   -         -             -
202103231200            gfspost_f042                           -                   -                   -         -             -
202103231200            gfspost_f048                           -                   -                   -         -             -
202103231200            gfspost_f054                           -                   -                   -         -             -
202103231200            gfspost_f060                           -                   -                   -         -             -
202103231200            gfspost_f066                           -                   -                   -         -             -
202103231200            gfspost_f072                           -                   -                   -         -             -
202103231200            gfspost_f078                           -                   -                   -         -             -
202103231200            gfspost_f084                           -                   -                   -         -             -
202103231200            gfspost_f090                           -                   -                   -         -             -
202103231200            gfspost_f096                           -                   -                   -         -             -
202103231200            gfspost_f102                           -                   -                   -         -             -
202103231200            gfspost_f108                           -                   -                   -         -             -
202103231200            gfspost_f114                           -                   -                   -         -             -
202103231200            gfspost_f120                           -                   -                   -         -             -
202103231200             gfsmetpg2g1                           -                   -                   -         -             -
202103231200             gfsmetpg2o1                           -                   -                   -         -             -
202103231200             gfsmetppcp1                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f000-f000                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f006-f006                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f012-f012                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f018-f018                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f024-f024                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f030-f030                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f036-f036                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f042-f042                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f048-f048                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f054-f054                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f060-f060                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f066-f066                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f072-f072                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f078-f078                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f084-f084                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f090-f090                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f096-f096                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f102-f102                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f108-f108                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f114-f114                           -                   -                   -         -             -
202103231200    gfsawips_20km_1p0deg_f120-f120                           -                   -                   -         -             -
202103231200    gfsawips_g2_f000-f000                           -                   -                   -         -             -
202103231200    gfsawips_g2_f006-f006                           -                   -                   -         -             -
202103231200    gfsawips_g2_f012-f012                           -                   -                   -         -             -
202103231200    gfsawips_g2_f018-f018                           -                   -                   -         -             -
202103231200    gfsawips_g2_f024-f024                           -                   -                   -         -             -
202103231200    gfsawips_g2_f030-f030                           -                   -                   -         -             -
202103231200    gfsawips_g2_f036-f036                           -                   -                   -         -             -
202103231200    gfsawips_g2_f042-f042                           -                   -                   -         -             -
202103231200    gfsawips_g2_f048-f048                           -                   -                   -         -             -
202103231200    gfsawips_g2_f054-f054                           -                   -                   -         -             -
202103231200    gfsawips_g2_f060-f060                           -                   -                   -         -             -
202103231200    gfsawips_g2_f066-f066                           -                   -                   -         -             -
202103231200    gfsawips_g2_f072-f072                           -                   -                   -         -             -
202103231200    gfsawips_g2_f078-f078                           -                   -                   -         -             -
202103231200    gfsawips_g2_f084-f084                           -                   -                   -         -             -
202103231200    gfsawips_g2_f090-f090                           -                   -                   -         -             -
202103231200    gfsawips_g2_f096-f096                           -                   -                   -         -             -
202103231200    gfsawips_g2_f102-f102                           -                   -                   -         -             -
202103231200    gfsawips_g2_f108-f108                           -                   -                   -         -             -
202103231200    gfsawips_g2_f114-f114                           -                   -                   -         -             -
202103231200    gfsawips_g2_f120-f120                           -                   -                   -         -             -
202103231200              gfsfbwinds                           -                   -                   -         -             -
202103231200                 gfsarch                           -                   -                   -         -             -
202103231200              gfscleanup                           -                   -                   -         -             -

'waveawipsbulls', 'waveawipsgridded', 'wavegempak', 'waveinit',
'wavepostbndpnt', 'wavepostbndpntbll', 'wavepostpnt', 'wavepostsbs', 'waveprep',
'npoess']
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