Enable different coupled settings for ensemble

parm/config/gefs/config.base.emc.dyn

@@ -138,10 +138,8 @@ export DO_WAVE="NO"
 export DO_OCN="NO"
 export DO_ICE="NO"
 export DO_AERO="NO"
-export CCPP_SUITE="FV3_GFS_v17_p8_ugwpv1"
 export WAVE_CDUMP="" # When to include wave suite: gdas, gfs, or both
 export DOBNDPNT_WAVE="NO"
-export cplwav2atm=".false."
 export FRAC_GRID=".true."
 
 # Set operational resolution
@@ -183,17 +181,14 @@ export ICERES=${OCNRES}
 
 case "${APP}" in
   ATM)
-    export confignamevarforufs="atm"
     ;;
   ATMA)
     export DO_AERO="YES"
-    export confignamevarforufs="atm_aero"
     ;;
   ATMW)
     export DO_COUPLED="YES"
     export DO_WAVE="YES"
     export WAVE_CDUMP="both"
-    export confignamevarforufs="leapfrog_atm_wav"
     ;;
   NG-GODAS)
     export DO_ATM="NO"
@@ -204,19 +199,15 @@ case "${APP}" in
     export DO_COUPLED="YES"
     export DO_OCN="YES"
     export DO_ICE="YES"
-    export CCPP_SUITE="FV3_GFS_v17_coupled_p8_ugwpv1"  # TODO: Does this include FV3_GFS_v17_p8?  Can this be used instead of FV3_GFS_v17_p8 on L141
-    export confignamevarforufs="cpld"
 
     if [[ "${APP}" =~ A$ ]]; then
         export DO_AERO="YES"
-        export confignamevarforufs="${confignamevarforufs}_aero"
     fi
 
     if [[ "${APP}" =~ ^S2SW ]]; then
         export DO_WAVE="YES"
         export WAVE_CDUMP="both"
         export cplwav2atm=".true."
-        export confignamevarforufs="${confignamevarforufs}_outerwave"
     fi
     ;;
   *)

parm/config/gefs/config.efcs

@@ -14,9 +14,10 @@ export DO_WAVE=${DO_WAVE_ENKF:-${DO_WAVE:-"NO"}}
 # Source model specific information that is resolution dependent
 string="--fv3 ${CASE_ENS}"
 # Ocean/Ice/Waves ensemble configurations are identical to deterministic member
-[[ ${DO_OCN} == "YES" ]] && string="${string} --mom6 ${OCNRES}"
-[[ ${DO_ICE} == "YES" ]] && string="${string} --cice6 ${ICERES}"
-[[ ${DO_WAVE} == "YES" ]] && string="${string} --ww3 ${waveGRD// /;}"
+[[ "${DO_OCN}" == "YES" ]] && string="${string} --mom6 ${OCNRES}"
+[[ "${DO_ICE}" == "YES" ]] && string="${string} --cice6 ${ICERES}"
+[[ "${DO_WAVE}" == "YES" ]] && string="${string} --ww3 ${waveGRD// /;}"
+[[ "${DO_AERO}" == "YES" ]] && string="${string} --gocart"
 # shellcheck disable=SC2086
 source "${EXPDIR}/config.ufs" ${string}
 

parm/config/gefs/config.fcst

@@ -13,20 +13,14 @@ esac
 
 # Source model specific information that is resolution dependent
 string="--fv3 ${CASE}"
-[[ ${DO_OCN} == "YES" ]] && string="${string} --mom6 ${OCNRES}"
-[[ ${DO_ICE} == "YES" ]] && string="${string} --cice6 ${ICERES}"
-[[ ${DO_WAVE} == "YES" ]] && string="${string} --ww3 ${waveGRD// /;}"
+[[ "${DO_OCN}" == "YES" ]] && string="${string} --mom6 ${OCNRES}"
+[[ "${DO_ICE}" == "YES" ]] && string="${string} --cice6 ${ICERES}"
+[[ "${DO_WAVE}" == "YES" ]] && string="${string} --ww3 ${waveGRD// /;}"
+[[ "${DO_AERO}" == "YES" ]] && string="${string} --gocart"
 # We are counting on $string being multiple arguments
 # shellcheck disable=SC2086
 source "${EXPDIR}/config.ufs" ${string}
 
-# Source component configs if necessary
-for component in WAVE OCN ICE AERO; do
-  control="DO_${component}"
-  if [[ ${!control} == "YES" ]]; then
-    source "${EXPDIR}/config.${component,,}"
-  fi
-done
 
 # Get task specific resources
 source "${EXPDIR}/config.resources" fcst
@@ -41,35 +35,6 @@ export esmf_profile=".false."
 export esmf_logkind="ESMF_LOGKIND_MULTI_ON_ERROR" #Options: ESMF_LOGKIND_MULTI_ON_ERROR, ESMF_LOGKIND_MULTI, ESMF_LOGKIND_NONE
 
 
-#######################################################################
-# COUPLING COMPONENTS
-
-# cpl defaults
-export cpl=".false."
-export cplflx=".false."
-export cplice=".false."
-export cplchm=".false."
-export cplwav=".false."
-
-# cpl changes based on APP
-
-if [[ "${DO_COUPLED}" == "YES" ]]; then
-  export cpl=".true."
-fi
-if [[ "${DO_AERO}" == "YES" ]]; then
-  export cplchm=".true."
-fi
-if [[ "${DO_ICE}" == "YES" ]]; then
-  export cplice=".true."
-  export cplflx=".true."
-fi
-if [[ "${DO_OCN}" == "YES" ]]; then
-  export cplflx=".true."
-fi
-if [[ "${DO_WAVE}" == "YES" ]]; then
-  export cplwav=".true."
-fi
-
 #######################################################################
 
 export FORECASTSH="${HOMEgfs}/scripts/exglobal_forecast.sh"
@@ -286,11 +251,6 @@ export DIAG_TABLE="${HOMEgfs}/parm/ufs/fv3/diag_table"
 # Write gfs restart files to rerun fcst from any break point
 export restart_interval=${restart_interval_gfs:-12}
 
-# Choose coupling with wave
-if [[ "${DO_WAVE}" = "YES" ]]; then
-    export cplwav=".true."
-fi
-
 # Turn off dry mass adjustment in GFS
 export adjust_dry_mass=".false."
 
@@ -301,17 +261,6 @@ else
   export io_layout="1,1"
 fi
 
-if [[ "${DO_AERO}" = "YES" ]]; then # temporary settings for aerosol coupling
-    export AERO_DIAG_TABLE="${AERO_DIAG_TABLE:-${HOMEgfs}/parm/ufs/fv3/diag_table.aero}"
-    export AERO_FIELD_TABLE="${AERO_FIELD_TABLE:-${HOMEgfs}/parm/ufs/fv3/field_table.aero}"
-    AERO_EMIS_FIRE="${AERO_EMIS_FIRE:-none}"
-    export AERO_EMIS_FIRE=${AERO_EMIS_FIRE,,}
-    export AERO_CONFIG_DIR="${AERO_CONFIG_DIR:-${HOMEgfs}/parm/ufs/chem}"
-    export AERO_INPUTS_DIR="${AERO_INPUTS_DIR:-}"
-    export fscav_aero="${aero_conv_scav_factors:-${fscav_aero}}"
-    export dnats_aero="${aero_diag_tracers:-0}"
-fi
-
 # Remember config.efcs will over-ride these values for ensemble forecasts
 # if these variables are re-defined there.
 # Otherwise, the ensemble forecast will inherit from config.fcst

parm/config/gefs/config.ufs

@@ -8,14 +8,15 @@
 
 echo "BEGIN: config.ufs"
 
-if [ $# -le 1 ]; then
+if (( $# <= 1 )); then
 
     echo "Must specify an input resolution argument to set variables!"
     echo "argument can be any one of the following:"
     echo "--fv3 C48|C96|C192|C384|C768|C1152|C3072"
     echo "--mom6 500|100|025"
     echo "--cice6 500|100|025"
     echo "--ww3 gnh_10m;aoc_9km;gsh_15m|gwes_30m|glo_025|glo_200|glo_500|mx025"
+    echo "--gocart"
 
     exit 1
 
@@ -25,34 +26,41 @@ fi
 skip_mom6=true
 skip_cice6=true
 skip_ww3=true
+skip_gocart=true
 skip_mediator=true
 
 # Loop through named arguments
-while [[ $# -gt 0 ]]; do
+while (( $# > 0 )); do
   key="$1"
   case "${key}" in
     "--fv3")
       fv3_res="$2"
+      shift
       ;;
     "--mom6")
       mom6_res="$2"
       skip_mom6=false
+      shift
       ;;
     "--cice6")
       cice6_res="$2"
       skip_cice6=false
+      shift
       ;;
     "--ww3")
       ww3_res="$2"
       skip_ww3=false
+      shift
+      ;;
+    "--gocart")
+      skip_gocart=false
       ;;
     *)    # unknown option
       echo "FATAL ERROR: Unknown option: ${key}, ABORT!"
       exit 1
       ;;
   esac
   shift
-  shift
 done
 
 # Mediator is required if any of the non-ATM components are used
@@ -98,6 +106,10 @@ case "${machine}" in
         ;;
     esac
     ;;
+  *)
+    echo "FATAL ERROR: Unrecognized machine ${machine}"
+    exit 14
+    ;;
 esac
 export npe_node_max
 
@@ -249,13 +261,28 @@ case ${fv3_res} in
 esac
 export OUTPUT_FILETYPE_ATM OUTPUT_FILETYPE_SFC
 
+# cpl defaults
+export cpl=".false."
+export cplflx=".false."
+export cplice=".false."
+export cplchm=".false."
+export cplwav=".false."
+export cplwav2atm=".false."
+export CCPP_SUITE="FV3_GFS_v17_p8_ugwpv1"
+model_list="atm"
+
 # Mediator specific settings
 if [[ "${skip_mediator}" == "false" ]]; then
+  export cpl=".true."
   export nthreads_mediator=${nthreads_fv3}  # Use same threads as FV3
+  export CCPP_SUITE="FV3_GFS_v17_coupled_p8_ugwpv1"  # TODO: Does this include FV3_GFS_v17_p8?  Can this be used instead of FV3_GFS_v17_p8?
 fi
 
 # MOM6 specific settings
 if [[ "${skip_mom6}" == "false" ]]; then
+  source "${EXPDIR}/config.ocn"
+  export cplflx=".true."
+  model_list="${model_list}.ocean"
   nthreads_mom6=1
   case "${mom6_res}" in
     "500")
@@ -362,6 +389,9 @@ fi
 
 # CICE6 specific settings
 if [[ "${skip_cice6}" == "false" ]]; then
+  source "${EXPDIR}/config.ice"
+  export cplice=".true."
+  model_list="${model_list}.ice"
   # Ensure we sourced the MOM6 section
   if [[ "${skip_mom6}" == "true" ]]; then
     echo "FATAL ERROR: CICE6 cannot be configured without MOM6, ABORT!"
@@ -398,6 +428,10 @@ fi
 
 # WW3 specific settings
 if [[ "${skip_ww3}" == "false" ]]; then
+  source "${EXPDIR}/config.wave"
+  export cplwav=".true."
+  export cplwav2atm=".true."
+  model_list="${model_list}.wave"
   nthreads_ww3=2
   case "${ww3_res}" in
     "gnh_10m;aoc_9km;gsh_15m")
@@ -428,4 +462,47 @@ if [[ "${skip_ww3}" == "false" ]]; then
   export ntasks_ww3 nthreads_ww3
 fi
 
+# GOCART specific settings
+if [[ "${skip_gocart}" == "false" ]]; then
+  source "${EXPDIR}/config.aero"
+  export cplchm=".true."
+  model_list="${model_list}.aero"
+fi
+
+# Set the name of the UFS (previously nems) configure template to use
+case "${model_list}" in
+  atm)
+    export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.atm.IN"
+    ;;
+  atm.aero)
+    export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.atm_aero.IN"
+    ;;
+  atm.wave)
+    export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.leapfrog_atm_wav.IN"
+    ;;
+  atm.ocean.ice)
+    export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld.IN"
+    ;;
+  atm.ocean.ice.aero)
+    export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_aero.IN"
+    ;;
+  atm.ocean.ice.wave)
+    export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_outerwave.IN"
+    ;;
+  atm.ocean.ice.wave.aero)
+    export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_aero_outerwave.IN"
+    ;;
+  *)
+    echo "FATAL ERROR: Unable to determine appropriate UFS configure template for ${model_list}"
+    exit 16
+    ;;
+esac
+
+if [[ ! -r "${ufs_configure_template}" ]]; then
+  echo "FATAL ERROR: ${ufs_configure_template} either doesn't exist or is not readable."
+  exit 17
+fi
+
+unset model_list
+
 echo "END: config.ufs"

parm/config/gfs/config.aero

@@ -5,8 +5,6 @@
 # Turn off warnings about unused variables
 # shellcheck disable=SC2034
 
-# Directory containing GOCART configuration files. Defaults to parm/ufs/chem if unset.
-AERO_CONFIG_DIR=${HOMEgfs}/parm/ufs/chem
 
 # Path to the input data tree
 case ${machine} in
@@ -30,14 +28,19 @@ case ${machine} in
     exit 2
     ;;
 esac
+export AERO_INPUTS_DIR
 
-# Biomass burning emission dataset. Choose from: GBBEPx, QFED, NONE (default)
-AERO_EMIS_FIRE=QFED
+export AERO_DIAG_TABLE="${HOMEgfs}/parm/ufs/fv3/diag_table.aero"
+export AERO_FIELD_TABLE="${HOMEgfs}/parm/ufs/fv3/field_table.aero"
+# Biomass burning emission dataset. Choose from: gbbepx, qfed, none
+export AERO_EMIS_FIRE="qfed"
+# Directory containing GOCART configuration files
+export AERO_CONFIG_DIR="${HOMEgfs}/parm/ufs/gocart"
 
 # Aerosol convective scavenging factors (list of string array elements)
 # Element syntax: '<tracer_name>:<factor>'. Use <tracer_name> = * to set default factor for all aerosol tracers
 # Scavenging factors are set to 0 (no scavenging) if unset
-aero_conv_scav_factors="'*:0.3','so2:0.0','msa:0.0','dms:0.0','nh3:0.4','nh4:0.6','bc1:0.6','bc2:0.6','oc1:0.4','oc2:0.4','dust1:0.6','dust2:0.6', 'dust3:0.6','dust4:0.6','dust5:0.6','seas1:0.5','seas2:0.5','seas3:0.5','seas4:0.5','seas5:0.5'"
+export fscav_aero="'*:0.3','so2:0.0','msa:0.0','dms:0.0','nh3:0.4','nh4:0.6','bc1:0.6','bc2:0.6','oc1:0.4','oc2:0.4','dust1:0.6','dust2:0.6', 'dust3:0.6','dust4:0.6','dust5:0.6','seas1:0.5','seas2:0.5','seas3:0.5','seas4:0.5','seas5:0.5'"
 #
 # Number of diagnostic aerosol tracers (default: 0)
-aero_diag_tracers=2
+export dnats_aero=2