Add S2SA nems.configure template

Most of the configuration was setup to allow S2SA, but there was no
appropriate nems.configure template. A new one was created by
starting with the S2SWA template and removing the wave portions.

Also added two UFSDA scripts that were missing from the git ignore
list.

Fixes #1592

.gitignore

@@ -129,7 +129,9 @@ ush/global_chgres.sh
 ush/global_chgres_driver.sh
 ush/global_cycle.sh
 ush/global_cycle_driver.sh
+ush/imsfv3_scf2ioda.py
 ush/jediinc2fv3.py
+ush/letkf_create_ens.py
 ush/mkwfsgbl.sh
 ush/ufsda
 ush/wafs_blending.sh

ush/nems.configure.cpld_aero.IN

@@ -0,0 +1,128 @@
+#############################################
+####  NEMS Run-Time Configuration File  #####
+#############################################
+
+# ESMF #
+logKindFlag:           @[esmf_logkind]
+globalResourceControl: true
+
+# EARTH #
+EARTH_component_list: MED ATM CHM OCN ICE
+EARTH_attributes::
+  Verbosity = 0
+::
+
+# MED #
+MED_model:                      @[med_model]
+MED_petlist_bounds:             @[med_petlist_bounds]
+MED_omp_num_threads:            @[med_omp_num_threads]
+::
+
+# ATM #
+ATM_model:                      @[atm_model]
+ATM_petlist_bounds:             @[atm_petlist_bounds]
+ATM_omp_num_threads:            @[atm_omp_num_threads]
+ATM_attributes::
+  Verbosity = 0
+  DumpFields = @[DumpFields]
+  ProfileMemory = false
+  OverwriteSlice = true
+::
+
+# CHM #
+CHM_model:                      @[chm_model]
+CHM_petlist_bounds:             @[chm_petlist_bounds]
+CHM_omp_num_threads:            @[chm_omp_num_threads]
+CHM_attributes::
+  Verbosity = 0
+::
+
+# OCN #
+OCN_model:                      @[ocn_model]
+OCN_petlist_bounds:             @[ocn_petlist_bounds]
+OCN_omp_num_threads:            @[ocn_omp_num_threads]
+OCN_attributes::
+  Verbosity = 0
+  DumpFields = @[DumpFields]
+  ProfileMemory = false
+  OverwriteSlice = true
+  mesh_ocn = @[MESH_OCN_ICE]
+::
+
+# ICE #
+ICE_model:                      @[ice_model]
+ICE_petlist_bounds:             @[ice_petlist_bounds]
+ICE_omp_num_threads:            @[ice_omp_num_threads]
+ICE_attributes::
+  Verbosity = 0
+  DumpFields = @[DumpFields]
+  ProfileMemory = false
+  OverwriteSlice = true
+  mesh_ice = @[MESH_OCN_ICE]
+  stop_n = @[RESTART_N]
+  stop_option = nhours
+  stop_ymd = -999
+::
+
+# CMEPS warm run sequence
+runSeq::
+@@[coupling_interval_slow_sec]
+   MED med_phases_prep_ocn_avg
+   MED -> OCN :remapMethod=redist
+   OCN
+   @@[coupling_interval_fast_sec]
+     MED med_phases_prep_atm
+     MED med_phases_prep_ice
+     MED -> ATM :remapMethod=redist
+     MED -> ICE :remapMethod=redist
+     ATM phase1
+     ATM -> CHM
+     CHM
+     CHM -> ATM
+     ATM phase2
+     ICE
+     ATM -> MED :remapMethod=redist
+     MED med_phases_post_atm
+     ICE -> MED :remapMethod=redist
+     MED med_phases_post_ice
+     MED med_phases_prep_ocn_accum
+   @
+   OCN -> MED :remapMethod=redist
+   MED med_phases_post_ocn
+   MED med_phases_restart_write
+@
+::
+
+# CMEPS variables
+
+DRIVER_attributes::
+::
+MED_attributes::
+      ATM_model = @[atm_model]
+      ICE_model = @[ice_model]
+      OCN_model = @[ocn_model]
+      history_n = 0
+      history_option = nhours
+      history_ymd = -999
+      coupling_mode = @[CPLMODE]
+      history_tile_atm = @[ATMTILESIZE]
+::
+ALLCOMP_attributes::
+      ScalarFieldCount = 2
+      ScalarFieldIdxGridNX = 1
+      ScalarFieldIdxGridNY = 2
+      ScalarFieldName = cpl_scalars
+      start_type = @[RUNTYPE]
+      restart_dir = RESTART/
+      case_name = ufs.cpld
+      restart_n = @[RESTART_N]
+      restart_option = nhours
+      restart_ymd = -999
+      dbug_flag = @[cap_dbug_flag]
+      use_coldstart = @[use_coldstart]
+      use_mommesh = @[use_mommesh]
+      eps_imesh = @[eps_imesh]
+      stop_n = @[FHMAX]
+      stop_option = nhours
+      stop_ymd = -999
+::