Copy land increments and land DA confs to COM (#1797)

This PR creates `COM_CONF_TMPL`, copies the YAML files generated for
land DA from initialize to COM and copies the increment files to COM.

Externals.cfg

@@ -57,7 +57,7 @@ protocol = git
 required = False
 
 [GDASApp]
-hash = 09757ce
+hash = 2774a10
 local_path = sorc/gdas.cd
 repo_url = https://github.com/NOAA-EMC/GDASApp.git
 protocol = git

jobs/JGLOBAL_LAND_ANALYSIS

@@ -17,12 +17,12 @@ GDUMP="gdas"
 # Begin JOB SPECIFIC work
 ##############################################
 # Generate COM variables from templates
-YMD=${PDY} HH=${cyc} generate_com -rx COM_OBS COM_LAND_ANALYSIS
+YMD=${PDY} HH=${cyc} generate_com -rx COM_OBS COM_LAND_ANALYSIS COM_CONF
 
 RUN=${GDUMP} YMD=${gPDY} HH=${gcyc} generate_com -rx \
     COM_ATMOS_RESTART_PREV:COM_ATMOS_RESTART_TMPL
 
-mkdir -m 775 -p "${COM_LAND_ANALYSIS}"
+mkdir -m 775 -p "${COM_LAND_ANALYSIS}" "${COM_CONF}"
 
 ###############################################################
 # Run relevant script

parm/config/gfs/config.com

@@ -48,6 +48,7 @@ COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}'
 
 declare -rx COM_TOP_TMPL='${ROTDIR}/${RUN}.${YMD}/${HH}'
 
+declare -rx COM_CONF_TMPL=${COM_BASE}'/conf'
 declare -rx COM_ATMOS_INPUT_TMPL=${COM_BASE}'/model_data/atmos/input'
 declare -rx COM_ATMOS_RESTART_TMPL=${COM_BASE}'/model_data/atmos/restart'
 declare -rx COM_ATMOS_ANALYSIS_TMPL=${COM_BASE}'/analysis/atmos'

sorc/checkout.sh

@@ -160,7 +160,7 @@ if [[ ${checkout_gsi} == "YES" ]]; then
 fi
 
 if [[ ${checkout_gdas} == "YES" ]]; then
-  checkout "gdas.cd" "https://github.com/NOAA-EMC/GDASApp.git" "09757ce"; errs=$((errs + $?))
+  checkout "gdas.cd" "https://github.com/NOAA-EMC/GDASApp.git" "2774a10"; errs=$((errs + $?))
 fi
 
 if [[ ${checkout_gsi} == "YES" || ${checkout_gdas} == "YES" ]]; then

ush/python/pygfs/task/land_analysis.py

@@ -323,8 +323,10 @@ def execute(self) -> None:
     def finalize(self) -> None:
         """Performs closing actions of the Land analysis task
         This method:
-        - copies analysis back to COM/ from DATA/
-        - tar and gzips the JEDI diagnostic files
+        - tar and gzip the output diag files and place in COM/
+        - copy the generated YAML file from initialize to the COM/
+        - copy the analysis files to the COM/
+        - copy the increment files to the COM/
 
         Parameters
         ----------
@@ -336,6 +338,15 @@ def finalize(self) -> None:
         statfile = os.path.join(self.task_config.COM_LAND_ANALYSIS, f"{self.task_config.APREFIX}landstat.tgz")
         self.tgz_diags(statfile, self.task_config.DATA)
 
+        logger.info("Copy full YAML to COM")
+        src = os.path.join(self.task_config['DATA'], f"{self.task_config.APREFIX}letkfoi.yaml")
+        dest = os.path.join(self.task_config.COM_CONF, f"{self.task_config.APREFIX}letkfoi.yaml")
+        yaml_copy = {
+            'mkdir': [self.task_config.COM_CONF],
+            'copy': [[src, dest]]
+        }
+        FileHandler(yaml_copy).sync()
+
         logger.info("Copy analysis to COM")
         template = f'{to_fv3time(self.task_config.current_cycle)}.sfc_data.tile{{tilenum}}.nc'
         anllist = []
@@ -346,6 +357,16 @@ def finalize(self) -> None:
             anllist.append([src, dest])
         FileHandler({'copy': anllist}).sync()
 
+        logger.info('Copy increments to COM')
+        template = f'landinc.{to_fv3time(self.task_config.current_cycle)}.sfc_data.tile{{tilenum}}.nc'
+        inclist = []
+        for itile in range(1, self.task_config.ntiles + 1):
+            filename = template.format(tilenum=itile)
+            src = os.path.join(self.task_config.DATA, 'anl', filename)
+            dest = os.path.join(self.task_config.COM_LAND_ANALYSIS, filename)
+            inclist.append([src, dest])
+        FileHandler({'copy': inclist}).sync()
+
     @staticmethod
     @logit(logger)
     def get_bkg_dict(config: Dict) -> Dict[str, List[str]]: