Wcoss2 nco (#35)

* address CFP machine checks, jlogfile, compath * address CFP machine checks on gldas_forcing.sh * use ftn to replace mpifort on wcoss2 * addressed the requested changes from NCO Co-authored-by: Helin Wei <[email protected]> Co-authored-by: Helin Wei <[email protected]>
NOAA-EMC · Jan 12, 2022 · 06b5bf0 · 06b5bf0
1 parent e757e6e
commit 06b5bf0
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Showing 14 changed files with 36 additions and 40 deletions.
diff --git a/jobs/JGDAS_ATMOS_GLDAS b/jobs/JGDAS_ATMOS_GLDAS
@@ -70,9 +70,6 @@ export pgmerr=errfile
 export CDATE=${CDATE:-${PDY}${cyc}}
 export CDUMP=${CDUMP:-${RUN:-"gdas"}}
 export COMPONENT=${COMPONENT:-atmos}
-if [ $RUN_ENVIR = "nco" ]; then
-    export ROTDIR=${COMROOT:?}/$NET/$envir
-fi
 
 
 ##############################################

diff --git a/modulefiles/gdas2gldas.wcoss2.lua b/modulefiles/gdas2gldas.wcoss2.lua
@@ -4,7 +4,7 @@ Load environment to run GLDAS on WCOSS2
 
 envvar_ver=os.getenv("envvar_ver") or "1.0"
 PrgEnv_intel_ver=os.getenv("PrgEnv_intel_ver") or "8.1.0"
-craype_ver=os.getenv("craype_ver") or "2.7.8"
+craype_ver=os.getenv("craype_ver") or "2.7.10"
 intel_ver=os.getenv("intel_ver") or "19.1.3.304"
 cray_mpich_ver=os.getenv("cray_mpich_ver") or "8.1.9"
 load(pathJoin("envvar", envvar_ver))

diff --git a/modulefiles/gldas2gdas.wcoss2.lua b/modulefiles/gldas2gdas.wcoss2.lua
@@ -4,7 +4,7 @@ Load environment to run GLDAS on WCOSS2
 
 envvar_ver=os.getenv("envvar_ver") or "1.0"
 PrgEnv_intel_ver=os.getenv("PrgEnv_intel_ver") or "8.1.0"
-craype_ver=os.getenv("craype_ver") or "2.7.8"
+craype_ver=os.getenv("craype_ver") or "2.7.10"
 intel_ver=os.getenv("intel_ver") or "19.1.3.304"
 cray_mpich_ver=os.getenv("cray_mpich_ver") or "8.1.9"
 load(pathJoin("envvar", envvar_ver))

diff --git a/modulefiles/gldas_forcing.wcoss2.lua b/modulefiles/gldas_forcing.wcoss2.lua
@@ -4,7 +4,7 @@ Load environment to run GLDAS on WCOSS2
 
 envvar_ver=os.getenv("envvar_ver") or "1.0"
 PrgEnv_intel_ver=os.getenv("PrgEnv_intel_ver") or "8.1.0"
-craype_ver=os.getenv("craype_ver") or "2.7.8"
+craype_ver=os.getenv("craype_ver") or "2.7.10"
 intel_ver=os.getenv("intel_ver") or "19.1.3.304"
 cray_mpich_ver=os.getenv("cray_mpich_ver") or "8.1.9"
 load(pathJoin("envvar", envvar_ver))

diff --git a/modulefiles/gldas_model.wcoss2.lua b/modulefiles/gldas_model.wcoss2.lua
@@ -4,7 +4,7 @@ Load environment to run GLDAS on WCOSS2
 
 envvar_ver=os.getenv("envvar_ver") or "1.0"
 PrgEnv_intel_ver=os.getenv("PrgEnv_intel_ver") or "8.1.0"
-craype_ver=os.getenv("craype_ver") or "2.7.8"
+craype_ver=os.getenv("craype_ver") or "2.7.10"
 intel_ver=os.getenv("intel_ver") or "19.1.3.304"
 cray_mpich_ver=os.getenv("cray_mpich_ver") or "8.1.9"
 load(pathJoin("envvar", envvar_ver))

diff --git a/modulefiles/gldas_post.wcoss2.lua b/modulefiles/gldas_post.wcoss2.lua
@@ -4,7 +4,7 @@ Load environment to run GLDAS on WCOSS2
 
 envvar_ver=os.getenv("envvar_ver") or "1.0"
 PrgEnv_intel_ver=os.getenv("PrgEnv_intel_ver") or "8.1.0"
-craype_ver=os.getenv("craype_ver") or "2.7.8"
+craype_ver=os.getenv("craype_ver") or "2.7.10"
 intel_ver=os.getenv("intel_ver") or "19.1.3.304"
 cray_mpich_ver=os.getenv("cray_mpich_ver") or "8.1.9"
 load(pathJoin("envvar", envvar_ver))

diff --git a/modulefiles/gldas_rst.wcoss2.lua b/modulefiles/gldas_rst.wcoss2.lua
@@ -4,7 +4,7 @@ Load environment to run GLDAS on WCOSS2
 
 envvar_ver=os.getenv("envvar_ver") or "1.0"
 PrgEnv_intel_ver=os.getenv("PrgEnv_intel_ver") or "8.1.0"
-craype_ver=os.getenv("craype_ver") or "2.7.8"
+craype_ver=os.getenv("craype_ver") or "2.7.10"
 intel_ver=os.getenv("intel_ver") or "19.1.3.304"
 cray_mpich_ver=os.getenv("cray_mpich_ver") or "8.1.9"
 load(pathJoin("envvar", envvar_ver))

diff --git a/sorc/build_gdas2gldas.sh b/sorc/build_gdas2gldas.sh
@@ -7,17 +7,17 @@ cwd=`pwd`
 USE_PREINST_LIBS=${USE_PREINST_LIBS:-"true"}
 if [ $USE_PREINST_LIBS = true ]; then
   export MOD_PATH
-  module purge
+  module reset
   module use ../modulefiles
   module load gdas2gldas.$target             > /dev/null 2>&1
 else
   export MOD_PATH=${cwd}/lib/modulefiles
   if [ $target = wcoss_cray ]; then
-    module purge
+    module reset
     module use ../modulefiles
     module load gdas2gldas.${target}_userlib > /dev/null 2>&1
   else
-    module purge
+    module reset
     module use ../modulefiles
     module load gdas2gldas.$target           > /dev/null 2>&1
   fi

diff --git a/sorc/build_gldas2gdas.sh b/sorc/build_gldas2gdas.sh
@@ -7,17 +7,17 @@ cwd=`pwd`
 USE_PREINST_LIBS=${USE_PREINST_LIBS:-"true"}
 if [ $USE_PREINST_LIBS = true ]; then
   export MOD_PATH
-  module purge
+  module reset
   module use ../modulefiles
   module load gldas2gdas.$target             > /dev/null 2>&1
 else
   export MOD_PATH=${cwd}/lib/modulefiles
   if [ $target = wcoss_cray ]; then
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas2gdas.${target}_userlib > /dev/null 2>&1
   else
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas2gdas.$target           > /dev/null 2>&1
   fi

diff --git a/sorc/build_gldas_forcing.sh b/sorc/build_gldas_forcing.sh
@@ -7,17 +7,17 @@ cwd=`pwd`
 USE_PREINST_LIBS=${USE_PREINST_LIBS:-"true"}
 if [ $USE_PREINST_LIBS = true ]; then
   export MOD_PATH
-  module purge
+  module reset
   module use ../modulefiles
   module load gldas_forcing.$target             > /dev/null 2>&1
 else
   export MOD_PATH=${cwd}/lib/modulefiles
   if [ $target = wcoss_cray ]; then
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas_forcing.${target}_userlib > /dev/null 2>&1
   else
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas_forcing.$target           > /dev/null 2>&1
   fi

diff --git a/sorc/build_gldas_model.sh b/sorc/build_gldas_model.sh
@@ -7,17 +7,17 @@ cwd=`pwd`
 USE_PREINST_LIBS=${USE_PREINST_LIBS:-"true"}
 if [ $USE_PREINST_LIBS = true ]; then
   export MOD_PATH
-  module purge
+  module reset
   module use ../modulefiles
   module load gldas_model.$target             > /dev/null 2>&1
 else
   export MOD_PATH=${cwd}/lib/modulefiles
   if [ $target = wcoss_cray ]; then
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas_model.${target}_userlib > /dev/null 2>&1
   else
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas_model.$target           > /dev/null 2>&1
   fi

diff --git a/sorc/build_gldas_post.sh b/sorc/build_gldas_post.sh
@@ -7,17 +7,17 @@ cwd=`pwd`
 USE_PREINST_LIBS=${USE_PREINST_LIBS:-"true"}
 if [ $USE_PREINST_LIBS = true ]; then
   export MOD_PATH
-  module purge
+  module reset
   module use ../modulefiles
   module load gldas_post.$target             > /dev/null 2>&1
 else
   export MOD_PATH=${cwd}/lib/modulefiles
   if [ $target = wcoss_cray ]; then
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas_post.${target}_userlib > /dev/null 2>&1
   else
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas_post.$target           > /dev/null 2>&1
   fi

diff --git a/sorc/build_gldas_rst.sh b/sorc/build_gldas_rst.sh
@@ -7,17 +7,17 @@ cwd=`pwd`
 USE_PREINST_LIBS=${USE_PREINST_LIBS:-"true"}
 if [ $USE_PREINST_LIBS = true ]; then
   export MOD_PATH
-  module purge
+  module reset
   module use ../modulefiles
   module load gldas_rst.$target             > /dev/null 2>&1
 else
   export MOD_PATH=${cwd}/lib/modulefiles
   if [ $target = wcoss_cray ]; then
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas_rst.${target}_userlib > /dev/null 2>&1
   else
-    module purge
+    module reset
     module use ../modulefiles
     module load gldas_rst.$target           > /dev/null 2>&1
   fi

diff --git a/sorc/machine-setup.sh b/sorc/machine-setup.sh
@@ -26,15 +26,15 @@ if [[ -d /lfs3 ]] ; then
         source /apps/lmod/lmod/init/$__ms_shell
     fi
     target=jet
-    module purge
+    module reset
 elif [[ -d /scratch1 ]] ; then
     # We are on NOAA Hera
     if ( ! eval module help > /dev/null 2>&1 ) ; then
 	echo load the module command 1>&2
         source /apps/lmod/lmod/init/$__ms_shell
     fi
     target=hera
-    module purge
+    module reset
     MOD_PATH=/scratch2/NCEPDEV/nwprod/NCEPLIBS/modulefiles
 elif [[ -d /work ]] ; then
     # We are on Orion 
@@ -43,7 +43,7 @@ elif [[ -d /work ]] ; then
         source /apps/lmod/lmod/init/$__ms_shell
     fi
     target=orion
-    module purge
+    module reset
     MOD_PATH=/apps/contrib/NCEPLIBS/orion/modulefiles
 elif [[ -d /gpfs/hps && -e /etc/SuSE-release ]] ; then
     # We are on NOAA Luna or Surge
@@ -53,17 +53,17 @@ elif [[ -d /gpfs/hps && -e /etc/SuSE-release ]] ; then
     fi
     target=wcoss_cray
 
-    # Silence the "module purge" to avoid the expected error messages
+    # Silence the "module reset" to avoid the expected error messages
     # related to modules that load modules.
-    module purge > /dev/null 2>&1
+    module reset > /dev/null 2>&1
     module use /usrx/local/prod/modulefiles
     module use /gpfs/hps/nco/ops/nwprod/lib/modulefiles
     module use /gpfs/hps/nco/ops/nwprod/modulefiles
     module use /opt/cray/alt-modulefiles
     module use /opt/cray/craype/default/alt-modulefiles
     module use /opt/cray/ari/modulefiles
     module use /opt/modulefiles
-    module purge > /dev/null 2>&1
+    module reset > /dev/null 2>&1
 
     # Workaround until module issues are fixed:
     #unset _LMFILES_
@@ -86,7 +86,7 @@ elif [[ -L /usrx && "$( readlink /usrx 2> /dev/null )" =~ dell ]] ; then
 	source /usrx/local/prod/lmod/lmod/init/$__ms_shell
     fi
     target=wcoss_dell_p3
-    module purge 
+    module reset 
 
 elif [[ -d /lfs/h2 ]] ; then
     # We are on NOAA Cactus or Dogwood
@@ -95,8 +95,7 @@ elif [[ -d /lfs/h2 ]] ; then
         source /usr/share/lmod/lmod/init/$__ms_shell
     fi
     target=wcoss2
-    module purge
-    module load envvar/1.0
+    module reset
 
 elif [[ -d /dcom && -d /hwrf ]] ; then
     # We are on NOAA Tide or Gyre
@@ -105,15 +104,15 @@ elif [[ -d /dcom && -d /hwrf ]] ; then
         source /usrx/local/Modules/default/init/$__ms_shell
     fi
     target=wcoss
-    module purge
+    module reset
 elif [[ -d /glade ]] ; then
     # We are on NCAR Yellowstone
     if ( ! eval module help > /dev/null 2>&1 ) ; then
 	echo load the module command 1>&2
         . /usr/share/Modules/init/$__ms_shell
     fi
     target=yellowstone
-    module purge
+    module reset
 elif [[ -d /lustre && -d /ncrc ]] ; then
     # We are on GAEA. 
     if ( ! eval module help > /dev/null 2>&1 ) ; then
@@ -126,11 +125,11 @@ elif [[ -d /lustre && -d /ncrc ]] ; then
         source /etc/profile
     fi
     target=gaea
-    module purge
+    module reset
 elif [[ -d /data/prod ]] ; then
     # We are on SSEC S4
     target=s4
-    module purge
+    module reset
 else
     echo WARNING: UNKNOWN PLATFORM 1>&2
 fi