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That's the code I run and that's the corresponding error code:
No results to show
Please make sure that the organism is correct or set significant = FALSE
We couldn't solve this problem on our own by setting significant = FALSE and adding a user.threshold didn't help as well.
The text was updated successfully, but these errors were encountered:
No plant genome works for me either. I am looking for a solution.
In the meantime the online version of gprofiler2 works fine with cocoa: https://biit.cs.ut.ee/gprofiler/gost
myTopHits2 <- topTable(ebFit2, adjust ="BH", coef=1, number=50, sort.by="logFC")
myTopHits2
ebFit2
gost.res2 <- gost(rownames(myTopHits2), organism = "tccriollo", correction_method = "fdr", significant = F)
gost.res2
That's the code I run and that's the corresponding error code:
No results to show
Please make sure that the organism is correct or set significant = FALSE
We couldn't solve this problem on our own by setting significant = FALSE and adding a user.threshold didn't help as well.
The text was updated successfully, but these errors were encountered: