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Error in Step 5 #3

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sabralfa opened this issue Apr 26, 2023 · 1 comment
Open

Error in Step 5 #3

sabralfa opened this issue Apr 26, 2023 · 1 comment

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@sabralfa
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sabralfa commented Apr 26, 2023

myTopHits2 <- topTable(ebFit2, adjust ="BH", coef=1, number=50, sort.by="logFC")
myTopHits2
ebFit2
gost.res2 <- gost(rownames(myTopHits2), organism = "tccriollo", correction_method = "fdr", significant = F)
gost.res2

That's the code I run and that's the corresponding error code:
No results to show
Please make sure that the organism is correct or set significant = FALSE

We couldn't solve this problem on our own by setting significant = FALSE and adding a user.threshold didn't help as well.

@fi4sko
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fi4sko commented Apr 27, 2023

No plant genome works for me either. I am looking for a solution.
In the meantime the online version of gprofiler2 works fine with cocoa: https://biit.cs.ut.ee/gprofiler/gost

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