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@NAMlab

NAMlab

Network Analysis and Modelling Lab at the Leibniz Institute of Plant Genetics and Crop Plant Research

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  1. DeepCRE DeepCRE Public

    Deep learning the cis-regulatory code for gene expression in selected model plants

    R 11 1

  2. PlantEd PlantEd Public

    RTS Simulation, Plant Survival Game

    Python 4 1

  3. kILBIL kILBIL Public

    Custom code used in the manuscript:

    R 2 2

  4. IPK_R_courses IPK_R_courses Public

    IPK R courses, tutorials etc.

  5. 19_mlcb 19_mlcb Public

    Forked from jbkinney/19_mlcb

    Code for Tareen & Kinney (MLCB 2019) https://doi.org/10.1101/835942

    Jupyter Notebook

  6. fastqc fastqc Public

    Forked from csf-ngs/fastqc

    csf fork of fastqc for usage on selected reads of unaligned bam file

    Java

Repositories

Showing 10 of 24 repositories
  • deepCRE_reimplemented Public

    This repo reimplements deepCRE using tensorflow 2.10.0 and SHAP. Thus replacing tensorflow 1.14.0 and DeepLIFT

    NAMlab/deepCRE_reimplemented’s past year of commit activity
    Python 0 2 0 0 Updated Dec 20, 2024
  • tomato-rna-meta Public

    Data, code, and results for our paper Identification of core, conditional and crosstalk components of tomato heat stress response using integrative transcriptomics and orthology (https://doi.org/10.21203/rs.3.rs-4337825/v1). If you use any of our code or results in a scientific publication, we would be grateful if you cite the paper.

    NAMlab/tomato-rna-meta’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Nov 22, 2024
  • streamlit_deepcre_app Public

    This repository contains the code for the deepCRE web application

    NAMlab/streamlit_deepcre_app’s past year of commit activity
    Python 0 AGPL-3.0 0 9 0 Updated Nov 21, 2024
  • PlantEd-AI Public

    Reinforcement learning based bots playing the PlantEd game

    NAMlab/PlantEd-AI’s past year of commit activity
    Python 0 0 0 0 Updated Nov 1, 2024
  • rnaseq-mapper Public
    NAMlab/rnaseq-mapper’s past year of commit activity
    Nextflow 0 1 0 0 Updated Oct 2, 2024
  • PlantEd Public

    RTS Simulation, Plant Survival Game

    NAMlab/PlantEd’s past year of commit activity
    Python 4 GPL-3.0 1 0 0 Updated Sep 27, 2024
  • moca_blue Public
    NAMlab/moca_blue’s past year of commit activity
    R 0 0 0 0 Updated Aug 27, 2024
  • QBIO Public

    QBIO HHU course materials

    NAMlab/QBIO’s past year of commit activity
    R 0 0 4 0 Updated May 17, 2024
  • 2024_Intro_RNAseq_Analysis_Course Public

    Introduction to RNAseq Analysis Course Material

    NAMlab/2024_Intro_RNAseq_Analysis_Course’s past year of commit activity
    0 MIT 0 0 0 Updated May 8, 2024
  • DeepCRE Public

    Deep learning the cis-regulatory code for gene expression in selected model plants

    NAMlab/DeepCRE’s past year of commit activity
    R 11 1 0 0 Updated Mar 15, 2024
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