Implement API methods for admin object metadata #38
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: KBase Workspace tests | |
| on: | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| push: | |
| # run workflow when merging to main or develop | |
| branches: | |
| - main | |
| - master | |
| - develop | |
| # TODO find out what minio ver we're using in CI / appdev / prod and use that | |
| # TODO split tests into mongo related & non mongo related. Run the former once. | |
| jobs: | |
| workspace_container_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies and set up test config | |
| shell: bash | |
| run: | | |
| # set up python dependencies | |
| pip install pytest requests | |
| - name: Run tests | |
| shell: bash | |
| run: | | |
| sh scripts/run_tests.sh | |
| workspace_deluxe_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - java: '11' | |
| mongo: 'mongodb-linux-x86_64-3.6.23' | |
| minio: '2019-05-23T00-29-34Z' | |
| wired_tiger: 'true' | |
| ant_test: 'test_quick_coverage' | |
| # the current production setup | |
| - java: '11' | |
| mongo: 'mongodb-linux-x86_64-3.6.13' | |
| minio: '2019-05-23T00-29-34Z' | |
| wired_tiger: 'false' | |
| ant_test: 'test_quick_coverage' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'temurin' | |
| java-version: ${{matrix.java}} | |
| - name: Set up Python 3.7 # sample service is on 3.7, handle service is on sdkbase2.latest | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.7" | |
| - name: Install dependencies and set up test config | |
| shell: bash | |
| run: | | |
| export HOMEDIR=`pwd` | |
| # set up python dependencies | |
| cd python_dependencies | |
| pip install pipenv | |
| pipenv sync --system | |
| cd .. | |
| # move to parent dir of homedir to install binaries etc | |
| cd .. | |
| # set up jars | |
| git clone https://github.com/kbase/jars | |
| export JARSDIR=$(pwd)/jars/lib/jars/ | |
| # set up arango | |
| export ARANGODB_VER=3.9.1 | |
| export ARANGODB_V=39 | |
| curl -O https://download.arangodb.com/arangodb$ARANGODB_V/Community/Linux/arangodb3-linux-$ARANGODB_VER.tar.gz | |
| tar -xf arangodb3-linux-$ARANGODB_VER.tar.gz | |
| export ARANGO_EXE=$(pwd)/arangodb3-linux-$ARANGODB_VER/bin/arangod | |
| export ARANGO_JS=$(pwd)/arangodb3-linux-$ARANGODB_VER/usr/share/arangodb3/js/ | |
| # set up handle service | |
| export HS_COMMIT=08e18379817e16db920501b66ba62b66598f506c | |
| export LOG_COMMIT=b549c557e3c519e0a55eadf7863a93db25cd6806 | |
| git clone https://github.com/kbase/handle_service2.git | |
| cd handle_service2/ | |
| git checkout $HS_COMMIT | |
| sudo chmod -R 777 . | |
| cd lib/ | |
| mkdir biokbase | |
| cd biokbase/ | |
| wget https://raw.githubusercontent.com/kbase/sdkbase2/$LOG_COMMIT/log.py | |
| cd .. | |
| export HSDIR=`pwd` | |
| cd ../.. | |
| # set up sample service | |
| export SAMPLE_COMMIT=6813fb148e95db2b11db6eea04f4d1d45cbb7119 | |
| git clone https://github.com/kbase/sample_service.git | |
| cd sample_service | |
| git checkout $SAMPLE_COMMIT | |
| cd lib | |
| export SAMPLE_DIR=`pwd` | |
| cd ../.. | |
| # set up blobstore | |
| wget -q -O blobstore https://github.com/kbase/blobstore/releases/download/v0.1.2/blobstore_linux_amd64 | |
| chmod a+x blobstore | |
| export BLOBEXE=$(pwd)/blobstore | |
| # set up mongo | |
| wget -q http://fastdl.mongodb.org/linux/${{matrix.mongo}}.tgz | |
| tar xfz ${{matrix.mongo}}.tgz | |
| export MONGOD=`pwd`/${{matrix.mongo}}/bin/mongod | |
| # set up minio | |
| export MINIO=$HOMEDIR/test_dependencies/minio/${{matrix.minio}}/minio | |
| gunzip $MINIO.gz | |
| chmod a+x $MINIO | |
| # set up test config | |
| cd $HOMEDIR | |
| cp -n test.cfg.example test.cfg | |
| sed -i "s#^test.temp.dir =.*#test.temp.dir=temp_test_dir#" test.cfg | |
| sed -i "s#^test.mongo.exe.*#test.mongo.exe=$MONGOD#" test.cfg | |
| sed -i "s#^test.minio.exe.*#test.minio.exe=$MINIO#" test.cfg | |
| sed -i "s#^test.mongo.useWiredTiger.*#test.mongo.useWiredTiger=${{matrix.wired_tiger}}#" test.cfg | |
| sed -i "s#^test.jars.dir.*#test.jars.dir=$JARSDIR#" test.cfg | |
| sed -i "s#^test.blobstore.exe.*#test.blobstore.exe=$BLOBEXE#" test.cfg | |
| sed -i "s#^test.handleservice.dir.*#test.handleservice.dir=$HSDIR#" test.cfg | |
| sed -i "s#^test.sampleservice.dir.*#test.sampleservice.dir=$SAMPLE_DIR#" test.cfg | |
| sed -i "s#^test.arango.exe.*#test.arango.exe=$ARANGO_EXE#" test.cfg | |
| sed -i "s#^test.arango.js.*#test.arango.js=$ARANGO_JS#" test.cfg | |
| cat test.cfg | |
| - name: Run tests | |
| shell: bash | |
| run: | | |
| ant javadoc | |
| ant ${{matrix.ant_test}} | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: true |