Check out the additional options for performing 3D segmenation, and more guidance here. Also, the latest mask creation function get_masks_torch reduces CPU RAM usage compared to the previous version, and is available to run on the GPU for faster mask creation.
Updated info with CPU/GPU RAM usage and approx runtimes for single images, available here.
Also we should have full compatibility with MPS at least in 2D (thanks @OratHelm !) And thanks to @qin-yu you can share your cellpose models to the bioimage.io model zoo.
What's Changed
- MPS compatibility on Apple Silicon by @OratHelm in #1003
- Rev3 by @carsen-stringer, adds additional denoising models and anisotropy models, in #1008
- Add missing train/test files to _process_train_test() call by @kemaleren in #995
imagecodecsno longer compiles withpython 3.8by @ajinkya-kulkarni in #979- Fix link in doc by @maweigert in #970
- allows --all channels to work in CLI by @lacan in #949
- Export CPnet to BioImage.IO Model Zoo by @qin-yu in #988
- Bugfix: Resizing masks containing over 65,535 cells not supported by OpenCV by @Tobiaspk in #938
- Add .flex to the allowed image file extensions by @mmasinas in #881
- added optional params cp_path and logfile_name to the setup_logger fu… by @MaxJoas in #862
- Skip empty outlines and display a message in the console. by @francodgstn in #829
- Fix intensity normalizations by @qin-yu in #981
- Add docs for BioImage.IO: finding & sharing models by @qin-yu in #1011
- New3d by @carsen-stringer, adds new mask creation script on GPU, in #1030
- GUI selection for SGD/RAdam Training by @ian-coccimiglio in #1022
New Contributors
- @OratHelm made their first contribution in #1003
- @kemaleren made their first contribution in #995
- @maweigert made their first contribution in #970
- @lacan made their first contribution in #949
- @qin-yu made their first contribution in #988
- @Tobiaspk made their first contribution in #938
- @mmasinas made their first contribution in #881
- @MaxJoas made their first contribution in #862
- @ian-coccimiglio made their first contribution in #1022
Full Changelog: v3.0.10...v3.1.0
Contributors
lacan, kemaleren, and 10 other contributors