Measuring spoon

Masking fixes to rotational_minctracc.py allowing specification and use of separate source and target masks.

Coffee Dripper

rotational_minctracc.py uses minccmp instead of Pyminc to avoid memory leakage.
remove minc-scripts submodule and include vtk_meshconvert.py directly.

Peanut Butter

Added compute_determinant.py
Added C datatype options for minc_displacement

Pepper shaker

Added object_volume_dot_product from unreleased mouse-thickness package.

kecap manis

Rewrite TFCE using numpy instead of weave (obsolete).

Fijate Bien

• rotational_minctracc.py now cleans up files that were stored in /dev/shm during processing. This keeps the number of files around at any time to about 13
• rotational_minctracc.py can now use both a 6 and a 12 parameter registration for its alignment. In sparse data sets (for instance skulls) it can be essential to use a 12 parameter alignment from the start
• fixed the clean up procedure in rotational_minctracc.py. Removes temp file on a SIGTERM and SIGINT signal. (So also when getting Ctrl+c)

Sugarless - the working version

Where the new script will actually gets installed.

Sugarless

added script: make_xfm_for_grid.pl which creates an xfm file for a provided deformation grid (vector file)

Sandwich

v0.1.18

Merge branch 'develop'

Chalkboard

Fix compilation against static HDF5.

Fixes #7.