fixes some issues seen with GSEA actual use #49
Annotations
3 errors and 6 warnings
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Run r-lib/actions/check-r-package@v2
--- re-building ‘command_line_interface.Rmd’ using rmarkdown
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Run r-lib/actions/check-r-package@v2
Build process failed
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Run r-lib/actions/check-r-package@v2
Process completed with exit code 1.
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Run r-lib/actions/setup-r-dependencies@v2
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release.
A separate `actions/cache/restore` step should be used instead.
See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
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Run r-lib/actions/check-r-package@v2
No files were found with the provided path: /home/runner/work/categoryCompare2/categoryCompare2/check. No artifacts will be uploaded.
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Upload check results
No files were found with the provided path: check. No artifacts will be uploaded.
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Run r-lib/actions/setup-pandoc@v1
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
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