updated testing and passing checks #48
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| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install X11 dependencies on MacOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install --cask xquartz | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: rcmdcheck | |
| - name: Reinstall preprocessCore | |
| run: BiocManager::install("preprocessCore", configure.args = c(preprocessCore = "--disable-threading"), force= TRUE, update=TRUE, type = "source") | |
| shell: Rscript {0} | |
| - name: check os | |
| run: R.version$os | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |