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Simulation of calcium signaling in fine astrocytic processes (Denizot et al 2019)
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This is the README file for the model associated with the paper: Denizot, A., Arizono, M., Nägerl, V., Soula, H., Berry, H. (2019). Simulation of calcium signaling in fine astrocytic processes: effect of spatial properties on spontaneous activity. We present here 4 different implementations of the model, described below. ##################### ##### Gillespie ##### ##################### This model corresponds to the Gillespie implementation of the model. It has been developed in python. This model has been used in Figure 2. ##################### ######## ODE ######## ##################### This model corresponds to ODE model presented in Fig2 of the paper. It requires XPPAUT software, which is freely available at http://www.math.pitt.edu/~bard/xpp/xpp.html ###################### ### Particle-based ### ###################### This model corresponds to the particle-based implementation of the model. It has been developed in C. This is the model used in Figures 2 to 5 of the paper. ################# ##### STEPS ##### ################# This model corresponds to the GCaMP6s model presented in Fig6 of the paper. It has been developed in python and requires STEPS software, which is freely available at http://steps.sourceforge.net/STEPS/default.php Contact: [email protected]
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Simulation of calcium signaling in fine astrocytic processes (Denizot et al 2019)
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