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@MarioniLab

Marioni Laboratory

A central repository for projects in John Marioni's group

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  1. miloR miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 318 20

  2. EmbryoTimecourse2018 EmbryoTimecourse2018 Public

    Data and analysis scripts for our Embryo Timecourse paper.

    HTML 64 35

  3. DropletUtils DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    R 54 26

  4. miloDE miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    R 53 2

  5. MNN2017 MNN2017 Public archive

    Code for the MNN manuscript figures

    HTML 51 19

  6. scran scran Public

    Clone of the Bioconductor repository for the scran package.

    R 39 23

Repositories

Showing 10 of 90 repositories
  • DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    MarioniLab/DropletUtils’s past year of commit activity
    R 54 26 14 1 Updated Jul 9, 2024
  • COSICC Public

    COSICC R package

    MarioniLab/COSICC’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jul 9, 2024
  • miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    MarioniLab/miloDE’s past year of commit activity
    R 53 2 3 0 Updated Jul 8, 2024
  • miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    MarioniLab/miloR’s past year of commit activity
    R 318 GPL-3.0 20 29 0 Updated Jul 3, 2024
  • CELLOseq Public

    Transposable element expression at unique loci in single cells with CELLO-seq

    MarioniLab/CELLOseq’s past year of commit activity
    Shell 7 MIT 4 1 0 Updated Jun 17, 2024
  • EmptyDropsMultiome Public

    Removing empty droplets in multiome datasets

    MarioniLab/EmptyDropsMultiome’s past year of commit activity
    R 9 0 0 0 Updated Jun 3, 2024
  • BE_perturb_seq_drug_resistance Public
    MarioniLab/BE_perturb_seq_drug_resistance’s past year of commit activity
    HTML 0 0 0 0 Updated May 8, 2024
  • EmptyDropsMultiome2023_final Public
    MarioniLab/EmptyDropsMultiome2023_final’s past year of commit activity
    R 3 0 0 0 Updated Apr 23, 2024
  • analysis_chimera_data Public

    Systematic characterisation of perturbations in complex developing cell populations reveals mechanisms underpinning development and disease

    MarioniLab/analysis_chimera_data’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 10, 2024
  • miloDE_tutorials Public

    this folder stores Rmds and htmls to miloDE vigenettes

    MarioniLab/miloDE_tutorials’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 19, 2024
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