* Do not duplicate irace-acotsp.Rdata. Regenerate examples.

MLopez-Ibanez · Jul 20, 2024 · d201bd1 · d201bd1
1 parent 668a28d
commit d201bd1
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Showing 8 changed files with 309 additions and 225 deletions.
diff --git a/Makefile b/Makefile
@@ -186,7 +186,7 @@ examples: quick-install
 	@echo "*** Makefile: Regenerating data for vignettes and examples. This will take time..."
 	cd devel-examples/vignette-example/ && R --vanilla --slave --file=create-example-file.R
 	mv -t vignettes/ devel-examples/vignette-example/*.Rdata devel-examples/vignette-example/irace-acotsp-stdout.txt
-	mv -t inst/exdata/ vignettes/log-ablation.Rdata
+	mv -t inst/exdata/ vignettes/log-ablation.Rdata vignettes/irace-acotsp.Rdata
 	$(MAKE) vignettes
 	$(MAKE) check
 

diff --git a/devel-examples/vignette-example/sann.rda b/devel-examples/vignette-example/sann.rda
diff --git a/inst/exdata/irace-acotsp.Rdata b/inst/exdata/irace-acotsp.Rdata
diff --git a/inst/exdata/irace-acotsp.Rdata b/inst/exdata/irace-acotsp.Rdata
diff --git a/inst/exdata/log-ablation.Rdata b/inst/exdata/log-ablation.Rdata
diff --git a/vignettes/examples.Rdata b/vignettes/examples.Rdata
diff --git a/vignettes/irace-acotsp-stdout.txt b/vignettes/irace-acotsp-stdout.txt
diff --git a/vignettes/irace-acotsp.Rdata b/vignettes/irace-acotsp.Rdata
diff --git a/vignettes/irace-package.Rnw b/vignettes/irace-package.Rnw
@@ -230,8 +230,8 @@ library(knitr)
 <<exampleload,eval=TRUE,include=FALSE>>=
 library("irace")
 load("examples.Rdata") # loads "experiment" and "output"
-iraceResults <- irace::read_logfile("irace-acotsp.Rdata")
-log_ablation_file <- file.path(system.file(package="irace"), "exdata", "log-ablation.Rdata")
+iraceResults <- irace::read_logfile(system.file(package="irace", "exdata", "irace-acotsp.Rdata", mustWork=TRUE))
+log_ablation_file <- system.file(package="irace", "exdata", "log-ablation.Rdata", mustWork = TRUE)
 load(log_ablation_file)
 options(width = 70)
 @
@@ -2748,7 +2748,7 @@ plotAblation(ablog)
 @
 
 <<testAb, fig.pos="htb!", fig.align="center", out.width="0.75\\textwidth", fig.cap="Example of plot generated by \\code{plotAblation()}.", prompt=FALSE, eval=TRUE, echo=FALSE>>=
-logfile <- file.path(system.file(package="irace"), "exdata", "log-ablation.Rdata")
+logfile <- system.file(package="irace", "exdata", "log-ablation.Rdata", mustWork=TRUE)
 plotAblation(logfile)
 @