Adds CI to run unit tests against Pandas 3.0 #3
Workflow file for this run
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| name: Run unit tests with Pandas 3.0 | |
| on: | |
| push: | |
| branches: [ develop ] | |
| pull_request: | |
| branches: [ develop, releases/** ] | |
| jobs: | |
| run_pandas_3_unit_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Set up Node | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: node | |
| - name: Install Pandas 3.0 (i.e., Nightly) | |
| run: | | |
| python3 -m pip install --upgrade pip pytest | |
| python3 -m pip install --upgrade --force-reinstall --pre --extra-index \ | |
| https://pypi.anaconda.org/scientific-python-nightly-wheels/simple pandas[pyarrow] | |
| - name: Install Python 3 dependencies | |
| run: | | |
| python3 -m pip install git+https://github.com/LLNL/hatchet.git@develop | |
| python3 -m pip install -r requirements.txt | |
| python3 -m pip install . | |
| python3 -m pip list | |
| # From here on, I'm making use of the trick from the following | |
| # GitHub repo to not fail the full CI/CD pipeline if this fails: | |
| # https://github.com/burningmantech/ranger-ims-server/pull/1347/files | |
| - name: Basic test with PyTest | |
| id: test | |
| run: | | |
| PYTHONPATH=. $(which pytest) | |
| status=$? | |
| if [ $status -ne 0 ]; then | |
| echo "::warning::Optional CI test with Pandas 3 failed" | |
| echo "optional_fail=true" >> "${GITHUB_OUTPUT}" | |
| echo "optional_fail_status=${status}" >> "${GITHUB_OUTPUT}" | |
| fi | |
| exit 0 | |
| - name: Add comment to PR if test failed | |
| if: ${{ steps.test.outputs.optional_fail == 'true' }} | |
| uses: thollander/actions-comment-pull-request@v3 | |
| with: | |
| comment-tag: "pandas-3.0-test-notice" | |
| message: | | |
| ### Pandas 3.0 Unit Tests Failed! | |
| Due to breaking changes in Pandas 3.0 (namely, copy-on-write), we are performing optional | |
| tests of Thicket against the nightly release of Pandas 3.0. | |
| This is not a full testing failure, and it will not prevent your PR from being merged | |
| at this time. However, as we prepare for the release of Pandas 3.0, we encourage | |
| all developers to design their code to work with Pandas 3.0, if possible. | |
| Pytest status code: ${{ steps.test.outputs.optional_fail_status }} | |
| mode: 'upsert' | |
| - name: Add comment to PR if test passed | |
| if: ${{ steps.test.outputs.optional_fail == 'false' }} | |
| uses: thollander/actions-comment-pull-request@v3 | |
| with: | |
| comment-tag: "pandas-3.0-test-notice" | |
| message: | | |
| ### Pandas 3.0 Unit Tests Passed! | |
| Due to breaking changes in Pandas 3.0 (namely, copy-on-write), we are performing optional | |
| tests of Thicket against the nightly release of Pandas 3.0. | |
| This PR passed unit tests when run with Pandas 3.0! | |
| mode: 'upsert' |